Detailed information on CNT30333334


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42699|METE_CATRO, E-value = 9e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673277Cynara cardunculusSetaria viridis22.8180.1884.62182forward
CNT30404178Cynara cardunculusBeta vulgaris44.4992.4577.75355forward
CNT30555769Cynara cardunculusOryza glaberrima43.6181.8881.9348forward
CNT30597233Cynara cardunculusOryza meridionalis43.6194.5781.32348forward
CNT30104304Cynara cardunculusOryza rufipogon43.6198.3181.9348forward
CNT30578494Cynara cardunculusOryza barthii43.6198.0381.9348forward
CNT30118019Cynara cardunculusOryza nivara43.6198.8681.9348forward

Expression of CNT30333334

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MYLMPTSDICFQMDDLRSADTFCKSSALLLPSQNDSRANFSSLLGPIRG*

>peptide 2 (32 aa)
MIQERISALSWVPYGDNRRCEMPLFFEKRMFC*

>peptide 3 (73 aa)
VGVEPLGHFHSRDRGISSGHREVSVETNFTTVPVVSWGDSTEHGSGVKNLVIVREGVAGDVLDANIRHLFPDG*

>peptide 4 (30 aa)
MILLSSSHYTQSGMVQNFTAVAEKLELIIE*

Sequence

>CNT30333334
GTTGGTGTCGAACCACTTGGTCATTTCCATAGCAGGGACAGAGGCATTTCCTCTGGCCATCGAGAAGTAAGTGTCGAAACCAATTTCACCACCGTTCCAG
TTGTATCTTGGGGGGACAGCACCGAGCATGGTAGTGGTGTCAAGAACTTGGTCATAGTAAGAGAAGGTGTTGCTGGGGATGTACTTGATGCCAACATCAG
ACATTTGTTTCCAGATGGATGATCTGAGATCAGCAGACACATTCTGCAAATCCTCAGCACTGCTCTTGCCATCCCAGAATGATTCAAGAGCGAATTTCAG
CTCTCTCTTGGGTCCCATACGGGGATAACCGACGATGTGAGATGCCATTGTTCTTTGAAAAACGAATGTTTTGCTAAACTTCACCTAAATTGTAAACCTC
AAAAGTAGATTGATTTGAATCTGACAAGAAAGTTGACATGCAGTGTATTACAGCCAAATTTTTACACAGGCCATCATCACCATGATCTTGTTATCATCAA
GTCACTATACTCAATCGGGTATGGTACAGAATTTCACAGCAGTTGCAGAGAAATTAGAACTAATTATTGAATAAAGGATTTGAGGTTTTCATTATCAAGA
TGCTTGATCCCTTCACCAACCCCGAAAAGCTAGTTGTTTGCTAACTTTACAGGTATTACAGTAGAAAAAAATTGTGCTGGTCAGATACACCAATATAAGC
CGACATTTTGACTAAGAAGATAAGAGTAGGTTTTGTCTTCTTGGAAACCTAACTTCGACTCTAAATCAATCTCAACAATCGTCCATACTAAATCTAAA