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Detailed information on CNT30333332


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39586|METE_CHLRE, E-value = 2e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30361575Cynara cardunculusSorghum bicolor31.126.1383.23167forward

Expression of CNT30333332

Peptides detected in this lncRNA

>peptide 1 (29 aa)
QLYLGGTAPSMLYLGGTAPSMVVVSRTWS*

>peptide 2 (33 aa)
MIQERISALSWVPYGDNRRCEMPLFCSTTTQSI*

>peptide 3 (49 aa)
MYLMPTSDICFQMDDLRSADTFCKSSALLLPSQNDSRANFSSLLGPIRG*

>peptide 4 (51 aa)
PVVSWGDSTEHVVSWGDGTKHGSGVKNLVIVREGVAGDVLDANIRHLFPDG*

Sequence

>CNT30333332
TCCAGTTGTATCTTGGGGGGACAGCACCGAGCATGTTGTATCTTGGGGGGACGGCACCAAGCATGGTAGTGGTGTCAAGAACTTGGTCATAGTAAGAGAA
GGTGTTGCTGGGGATGTACTTGATGCCAACATCAGACATTTGTTTCCAGATGGATGATCTGAGATCAGCAGACACATTCTGCAAATCCTCAGCACTGCTC
TTGCCATCCCAGAATGATTCAAGAGCGAATTTCAGCTCTCTCTTGGGTCCCATACGGGGATAACCGACGATGTGAGATGCCATTGTTCTGTTCGACCACA
ACTCAATCAATTTAATAGAAAGGATAAACAGCAACTCAGATTAAAATCCACCACAACAAATCCAAATTACAGTTGAAAAACGAATGTTTTGCTAAACTTC
ACCTAAATTGTAAACCTCAAAAGTAGATTGATTTGAATCTGACAAGAAAGTTGACATGCAGTGTATTACAGCCAAATTTTTACACAGGCCATCATCACCA
TGATCTTGTTATCATCAAGTCACTATACTCAATCGGG