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Detailed information on CNT30333330


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30322845Cynara cardunculusAsparagus officinalis40.326.7181.41355forward

Expression of CNT30333330

Peptides detected in this lncRNA

>peptide 1 (73 aa)
VGVEPLGHFHSRDRGISSGHREVSVETNFTTVPVVSWGDSTEHGSGVKNLVIVREGVAGDVLDANIRHLFPDG*

>peptide 2 (49 aa)
MYLMPTSDICFQMDDLRSADTFCKSSALLLPSQNDSRANFSSLLGPIRG*

>peptide 3 (33 aa)
MIQERISALSWVPYGDNRRCEMPLFCSTTTQSI*

>peptide 4 (30 aa)
MILLSSSHYTQSGMVQNFTAVAEKLELIIE*

Sequence

>CNT30333330
GTTGGTGTCGAACCACTTGGTCATTTCCATAGCAGGGACAGAGGCATTTCCTCTGGCCATCGAGAAGTAAGTGTCGAAACCAATTTCACCACCGTTCCAG
TTGTATCTTGGGGGGACAGCACCGAGCATGGTAGTGGTGTCAAGAACTTGGTCATAGTAAGAGAAGGTGTTGCTGGGGATGTACTTGATGCCAACATCAG
ACATTTGTTTCCAGATGGATGATCTGAGATCAGCAGACACATTCTGCAAATCCTCAGCACTGCTCTTGCCATCCCAGAATGATTCAAGAGCGAATTTCAG
CTCTCTCTTGGGTCCCATACGGGGATAACCGACGATGTGAGATGCCATTGTTCTGTTCGACCACAACTCAATCAATTTAATAGAAAGGATAAACAGCAAC
TCAGATTAAAATCCACCACAACAAATCCAAATTACAGTTGAAAAACGAATGTTTTGCTAAACTTCACCTAAATTGTAAACCTCAAAAGTAGATTGATTTG
AATCTGACAAGAAAGTTGACATGCAGTGTATTACAGCCAAATTTTTACACAGGCCATCATCACCATGATCTTGTTATCATCAAGTCACTATACTCAATCG
GGTATGGTACAGAATTTCACAGCAGTTGCAGAGAAATTAGAACTAATTATTGAATAAAGGATTTGAGGTTTTCATTATCAAGATGCTTGATCCCTTCACC
AACCCCGAAAAGCTAGTTGTTTGCTAACTTTACAGGTATTACAGTAGAAAAAAATTGTGCTGGTCAGATACACCAATATAAGCCGACATTTTGACTAAGA
AGATAAGAGTAGGTTTTGTCTTCTTGGAAACCTAACTTCGACTCTAAATCAATCTCAACAATCGTCCATACTAAATCTAAA