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Detailed information on CNT30333329


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30563287Cynara cardunculusActinidia chinensis22.1123.0686.92107forward
CNT30555770Cynara cardunculusOryza glaberrima22.7329.1882.73110forward
CNT30264951Cynara cardunculusBrassica rapa19.2127.6882.893forward
CNT30212158Cynara cardunculusHelianthus annuus57.4471.4791.73278forward
CNT30478263Cynara cardunculusArabidopsis halleri22.1130.9284.11107forward
CNT30619828Cynara cardunculusCajanus cajan21.2828.4586.41103forward
CNT30597221Cynara cardunculusOryza meridionalis19.6344.3985.2695forward
CNT30358925Cynara cardunculusLactuca sativa46.6959.1688.94226forward
CNT30105511Cynara cardunculusOryza longistaminata19.633883.1695forward
CNT3027096Cynara cardunculusPopulus trichocarpa21.2829.685.44103forward
CNT30104583Cynara cardunculusOryza rufipogon19.6344.8184.2195forward
CNT30578457Cynara cardunculusOryza barthii22.7319.482.73110forward
CNT30118059Cynara cardunculusOryza nivara17.1528.3385.5483forward
CNT30604899Cynara cardunculusOryza punctata22.7347.2185.45110forward

Expression of CNT30333329

Peptides detected in this lncRNA

>peptide 1 (36 aa)
TFANNGLKRLKDTERSSKIISPDVPSINNSSKQVFA*

>peptide 2 (56 aa)
PLPTMASRDSRTLRDPARSLAQMFLPSTTPANRYLPEGKLVLIKSRVFSPRTKSKV*

Sequence

>CNT30333329
TACCTTTGCCAACAATGGCCTCAAGAGACTCAAGGACACTGAGAGATCCAGCAAGATCATTAGCCCAGATGTTCCTTCCATCAACAACTCCAGCAAACAG
GTATTTGCCTGAAGGGAAGCTGGTCTTGATCAAATCAAGAGTCTTCTCACCACGAACCAAATCGAAAGTGTAACCTGTAACTCCGGGCAAGGTAGTGAGG
GGAAGCTGGTCTTGATCAAATCAAGAGTCTTCTCACCACGAACCAAATCGAAAGTGTAACCTGTAACTCCGGGCAAGGTAGTGAGGGTTTTGAATGCATC
AGCAGGAATATCGGCAAAGTAGGTTGCAACAAGAACATTAAGACCAGAGCAAGTTGATTCTAGCTCAGAATAAGCCTTGGTGAAAGCTTGCAATTGGTGG
GGCTCAAGATCCTTCACAAGGGTAGCTTCATCAAACTGGATCCAGGTTGCACCAGCTTCCTTCAATTCGGCAATAACTTCCCTG