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Detailed information on CNT30333260


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30308381Cynara cardunculusTriticum aestivum8.3621.2591.861forward
CNT30680118Cynara cardunculusTriticum urartu8.3627.2391.861forward
CNT30371505Cynara cardunculusOryza glumipatula8.3624.793.4461forward
CNT30604605Cynara cardunculusOryza punctata8.3626.4190.1661reverse complement

Expression of CNT30333260

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MVAVDVEVVVFGINNSPRFVLSGIKRELRANRTSKA*

Sequence

>CNT30333260
GTAGCTGCTTAAAAGGCTTAAAAGGCACTTTCTCTCTTTATATAAGAACGCAAACACATGATCTGCTGGAATCATGGTGAAGTCTCTCTCATTTGATTTC
ATCTCCTCTTATTGGTTTCAGCTTGTGGTTATTGGTGGACGACGAAGGTTGTGAATGTGAAGACAATAAATAGTGGTGATGGTGGCAGTCAACAATGGTG
GGCGATGGTAGTCTAGCCGATGATCATGGTGGTGGACTTCGGTGATTGTGGATGATGTAAAGATGATGGACAAAAGGGGTGATGGGAGGTTGTTGCAAAT
ACCATAGTGGTGGCTAGTGGGTGATAATGATTGTGGAGGATGTGAAGATGGTGGATAGTGGTGGTGATGGTGGCCGTCGACGTTGAGGTGGTGGTCTTCG
GTATAAATAACTCACCAAGGTTTGTTTTATCTGGTATCAAACGGGAGCTACGAGCAAATAGAACATCGAAAGCTTGACGGAGCAATGCCGTGTGGAGGTA
GAAGGCCCACGGGTCGTGAACTTCTTTAAGAGTCGTTTATCAAATGCTTATCTGTTATATGTTTATCAAGTCATATTATTGTACTAGATGAACATGACAA
GGACTGGGAAACTCACCTTATAAGAATGATGTCAATGACCAAGAGCCTTATCGGGTGACGACTCTTACATGGTGTCGTTTTGATAACTAATAAATGATAG
TGTTAACTTTGATCGATAAGCGTTTACCGG