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Detailed information on CNT30333083


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDT1|POR_DAUCA, E-value = 7e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693247Cynara cardunculusOryza sativa27.3714.2385.15101forward
CNT30522232Cynara cardunculusSetaria italica24.128.9385.3989forward
CNT30701275Cynara cardunculusQuercus lobata23.3114.991.8686forward
CNT30710762Cynara cardunculusGlycine max45.2649.1285.63167forward
CNT30164816Cynara cardunculusPistacia vera30.8955.8885.09114forward
CNT30592165Cynara cardunculusMusa acuminata46.0760.581.18170forward
CNT30553602Cynara cardunculusOryza glaberrima27.3721.7785.15101forward
CNT30172855Cynara cardunculusTrifolium pratense49.8622.3882.07184forward
CNT30610520Cynara cardunculusGossypium raimondii37.6716.6985.61139forward
CNT30362130Cynara cardunculusSorghum bicolor24.1226.8185.3989forward
CNT3038429Cynara cardunculusCucumis melo37.1343.2282.48137forward
CNT30575951Cynara cardunculusOryza barthii27.3723.2785.15101forward
CNT30113199Cynara cardunculusFicus carica2924.5484.11107forward
CNT30726195Cynara cardunculusLupinus angustifolius55.5634.4581.95205forward

Expression of CNT30333083

Peptides detected in this lncRNA

>peptide 1 (86 aa)
VVAIQPGYREANVMPVSSWKRRWNSCIMSMLQTLLSLYAFAPSKSPPSIMAELLSPFNPPARPLMSPKLAFGECFKSSSNNLASKK*

>peptide 2 (48 aa)
MLQVIKQQSCKQEVTKMVSPNAELEPISRKCGLLSGRKINGCVANQHIK

>peptide 3 (61 aa)
CCCDTTGVQGSERDAGFFVETAVEFLHHEHVADLAVFVRLCTIKISSINHGRAVESVQSTG*

Sequence

>CNT30333083
CTGTTGTTGCGATACAACCGGGGTACAGGGAAGCGAACGTGATGCCGGTTTCTTCGTGGAAACGGCGGTGGAATTCTTGCATCATGAGCATGTTGCAGAC
CTTGCTGTCTTTGTACGCCTTTGCACCATCAAAATCTCCTCCATCAATCATGGCAGAGCTGTTGAGTCCGTTCAATCCACCGGCTAGACCTCTCATGTCT
CCCAAGTTAGCTTTTGGAGAATGCTTCAAGTCATCAAGCAACAATCTTGCAAGCAAGAAGTGACCAAGATGGTTAGTCCCAACGCTGAGCTCGAACCCAT
CAGCCGTAAATGTGGGCTCCTTAGCGGTCGGAAGATAAACGGCTGCGTTGCAAACCAACACATCAAGCG