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Detailed information on CNT30332970


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530060Cynara cardunculusEucalyptus grandis14.2929.9285.5376forward
CNT30515141Cynara cardunculusJuglans regia21.4310.8182.46114forward
CNT30586592Cynara cardunculusMusa acuminata23.525.1580.8125forward
CNT3084783Cynara cardunculusVigna radiata25.3821.584.44135forward
CNT30620641Cynara cardunculusCajanus cajan21.4321.2785.09114forward
CNT30643829Cynara cardunculusCannabis sativa24.6214.6582.44131forward
CNT30319727Cynara cardunculusAsparagus officinalis24.4415.0885.38130forward
CNT30496981Cynara cardunculusDigitaria exilis27.6324.1480.27147forward
CNT30176361Cynara cardunculusVigna angularis25.3822.4383.7135forward

Expression of CNT30332970

Peptides detected in this lncRNA

>peptide 1 (51 aa)
LKRFSLSLHAALFSLLELIDRLLSPRTTITVAYLSGSFILSTSGSRQLHNL*

>peptide 2 (49 aa)
FETFFPFSPRRFVLFIGTDRSSSFSPYHHNRRISFRQLHPIDFWISAAS*

>peptide 3 (61 aa)
MAGFGSLAPKTKNLVVAGGLTGFVFGVYFYTMRAVGGSDELQVAIDKFESQKIENEPASSK*

Sequence

>CNT30332970
TTTGAAACGTTTTTCCCTTTCTCTCCACGCCGCTTTGTTCTCTTTATTGGAACTGATCGATCGTCTTCTTTCTCCCCGTACCACCATAACCGTCGCATAT
CTTTCCGGCAGCTTCATCCTATCGACTTCTGGATCTCGGCAGCTTCATAATTTATAAGTAGGGAAGAGAGTGTTTGGTGGTTAAGATGGCTGGATTTGGT
AGCCTTGCACCAAAGACCAAGAATCTGGTGGTTGCTGGTGGCTTAACAGGTTTTGTGTTTGGTGTCTATTTCTACACCATGAGAGCTGTTGGAGGTTCAG
ATGAGCTTCAAGTAGCCATTGATAAGTTTGAATCTCAGAAAATTGAGAATGAGCCAGCTTCATCAAAATGACCCATATTTTGTATGCTTTAATGTTTTAA
ATAAGTTTGCTGAATTTATTTCATTTTAACTTTTCAAAGAAACCTGTTATAAATTTGTTGGGGGAAATACGTGTTACAACTTTGTAAACAAAATATTATT
TTCGAAAAGAATCGTTAACCTTTCTTTTTCTA