« Back to Cynara cardunculus search


Detailed information on CNT30332943


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703138Cynara cardunculusQuercus lobata64.1163.7482.34334forward
CNT30499549Cynara cardunculusCoffea canephora84.649079.82441forward
CNT30277485Cynara cardunculusChenopodium quinoa51.8231.6583.33270forward
CNT3020608Cynara cardunculusCitrullus lanatus78.1292.2982.06407forward
CNT3068683Cynara cardunculusQuercus suber65.6469.5182.46342forward
CNT30486152Cynara cardunculusOlea europaea64.337.0282.69335forward
CNT30506399Cynara cardunculusNicotiana attenuata45.8772.2184.1239forward
CNT3091042Cynara cardunculusSolanum tuberosum3854.2581.82198forward
CNT30143836Cynara cardunculusMedicago truncatula76.5868.4483.46399forward
CNT30359656Cynara cardunculusLactuca sativa93.4728.8291.17487forward
CNT30411763Cynara cardunculusPapaver somniferum85.839.6681.43447forward
CNT3055709Cynara cardunculusAmborella trichopoda63.1550.3180.55329forward
CNT30726386Cynara cardunculusLupinus angustifolius68.9139.9380.78359forward
CNT3050773Cynara cardunculusCucumis sativus77.5471.8982.43404forward

Expression of CNT30332943

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSNKLKSRVSKMMHHVILIPGEEIINNNHAISPRNQPINEMTSDETCTTSHHNP*

Sequence

>CNT30332943
CACCAATAGGATTCACGTTTCCCCAATAGGTTTCGACTTGTGGATGTTGTAGAGGATCACCGTAGACCTCACTGGTGCTCGTTAGCAAGAACCGTGCACC
GACTCTTTTTGCCAACCCTAACATGTTCAATGTCCCCACTACATTCGATATGATTGTTTTGACTGGATTGTATTTGTAATGAACAGGTGAAGCAGGGCAA
GCAAGGTGATAGATCTGATCGACTTCGAGTAGTAACGGCTCCACAACATCATGTCGAATAAGCTCAAATCTAGGGTTTCCAAAATGATGCATCACGTTAT
CCTTATTCCCGGTGAAGAAATTATCAACAACAATCACGCTATCTCCCCTCGCAATCAACCGATCAACGAGATGACTTCCGACGAAACCTGCACCACCAGT
CACCACAATCCTTAACCCCTTCCGTTTCAACCCTAACGGAATCTTCCCGCCCAAATTGAACGAATCGAATCCAGTAGGATACACAGATCGTCGTGGATTC
ATCATCTGGACCGCCTCGGAG