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Detailed information on CNT30332839


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099072Dioscorea rotundataSolanum tuberosum16.6825.8986.57283forward
CNT30592551Dioscorea rotundataMusa acuminata19.0325.9690.71323forward
CNT30511958Dioscorea rotundataSolanum lycopersicum6.633.6390.18112forward

Expression of CNT30332839

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKGGMEGRLQEAKLCKLDKSLIECRLLHEVS*

>peptide 2 (32 aa)
MGILGRSQEAAFRRFGPIAIHHHFTRFQLMTG*

>peptide 3 (61 aa)
MVCNFLLENLDQVSRIYKQGGVAKKQPADCPLQPDLYSLCEQGLGTEGMYGHSGQVARSRF*

>peptide 4 (36 aa)
MGVAPFPNQILDVSYTPRGATRAYGLLPCHLTSIPA*

>peptide 5 (33 aa)
MLGLLRFQRDPKGELLAVSLTSVGILGWKEASK*

>peptide 6 (34 aa)
LNYFCISSCGSSQLCALTWMTFNIMYPCSHTYIS*

Sequence

>CNT30332839
CTTAATTATTTTTGCATAAGTTCCTGCGGCTCGAGCCAGCTTTGCGCCTTGACCTGGATGACATTCAATATCATGTACCCATGTTCCCATACGTATATTA
GCTAATGGTATGCAATTTCCTACTTGAGAATTTAGATCAAGTATCTCGTATCTATAAGCAGGGGGGCGTGGCCAAGAAGCAGCCAGCTGACTGCCCCCTT
CAACCCGACCTTTATTCGCTGTGCGAACAAGGTCTTGGAACCGAAGGTATGTATGGGCATTCTGGGCAGGTCGCAAGAAGCCGCTTTTAGAAGGTTTGGA
CCAATCGCAATTCATCACCATTTTACCCGCTTCCAATTGATGACTGGCTAATATATAAGTGTTGACCTAAGCCCCTGTGCAGTGGCTCGGCTCCCGAACC
GTACGTGAGCTGCCTCGTACGGCTCTTCCTAAGAAGGTCGAAGCCCCCTCTATCAAACTTTTTGAAAAAGCCTTCGCCCTCCTATTCAACGGGGCTATTA
GAGAAGCAGCTTCGTTCCTGGACTTCTTTGCTTTTCTTTTTTTTTTAGGGCTTCGTTTCTGATACCGGCTTAGTTACGAGCTAACTTTCGCTGACTTCTT
TGTAGTCTCGGTGAATACTTTAAAACTCCGTTCCTTAGCCTCCACAGCTGACGTGACTCCGTACCGACCCCTTTCCCTTTGTAGACGGATAAGTGACTCT
GTAACCTTAGCTTTTCTCCTTTGTAGAACAGCTAAGCCAGTTCCTTAGTTTCACTTACCTAAAACCTAATCTGTTATTCCATAACCTTAGCCGAGCCGAG
GCTAAGTGACTTCGTAACCTTAACGTACTTTTGTTTTCGTACTTTTTCCCATCAGGTCTAACCTTTGCCGGGCTTTCGTCCCTTCGCCTATAGGCGGCCG
GCTTGGCTTCGCTATCGCTCATTACTTGGTATAGAGATCTCCCCGTGTAGTGTAGTGGTCGGCCTTCCCACCGGAATGCCTCCTTCCTTATAAGCCCCTT
GACTACAATAACAGGGGCTGTTCACCTTTGCTTTTGAAACTTAGCGACTTATATATATTTCTTTTTTTTATATTTAATAAAGAAAAACGAAAGACTATTG
TAAATGTAAAGGCGAACGGGGCTCCCAGGCCGGGACGTCTGGCAGAATGCTTGGCCTCCTGCGCTTCCAGCGAGACCCGAAGGGTGAGCTTCTGGCGGTT
AGCTTAACGTCAGTAGGCATTCTGGGCTGGAAGGAGGCAAGCAAATGAAGGGAGGCATGGAGGGCCGACTACAAGAAGCAAAGCTTTGTAAACTCGACAA
GTCGCTTATAGAATGCCGACTACTTCATGAAGTTTCATAAGGGGGGGAAGCGAAGCTTAGCGAGGCCGACCACGTAATAAGCTGCTGGCGGAGAAAGCTC
GAAGAGCTTCCCTTCATTCGTTGCTAAGCCAAGGTCCCAGGTCTCCGAGTCAGCCCGGGCTTTTTTTCGAAGAATCCTGCACCCATGGGCATACGGCCTG
GCAGGCCTTCCCTTTCCGCCGGAGCTTCATGGGTGTTGCCCCGTTCCCCAATCAGATTTTGGATGTGAGCTATACTCCGCGAGGAGCCACACGGGCGTAT
GGCCTTTTGCCTTGCCATTTGACCTCTATTCCCGCGTGAGACGGAATGCTCAGTGACAACCTCTCAATTGTCACCGCCTGGCCTCTTTTGCTACCAC