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Detailed information on CNT30332809


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 7e-176

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677101Dioscorea rotundataSetaria viridis37.1929.5194.94257reverse complement
CNT30710098Dioscorea rotundataGlycine max27.560.5195.79190forward
CNT30552690Dioscorea rotundataOryza glaberrima37.7717.0596.93261reverse complement
CNT3082954Dioscorea rotundataBrassica juncea28.6516.7890.91198reverse complement
CNT30609809Dioscorea rotundataGossypium raimondii39.9464.9489.86276reverse complement
CNT30364730Dioscorea rotundataSorghum bicolor57.0269.4994.42394forward
CNT30705531Dioscorea rotundataPrunus avium40.5210094.29280forward

Expression of CNT30332809

Peptides detected in this lncRNA

>peptide 1 (93 aa)
VSPHTWSYDFAETCVFGKQSPGPGHCDPLCEEAPLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGHLASLNR*

>peptide 2 (56 aa)
MFALLKPTFSLPLRPHLLARVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDQ*

>peptide 3 (55 aa)
ASAPIHGLTTLRRPVFLVNSRPGLVTATPFVRRHPFSRSYGAILPSSLERVVSRP*

Sequence

>CNT30332809
GCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAGGAGGC
ACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTC
GGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGGCATGGGTCACCTTGCGTCCTTGAACCGATAACCATCTTTCGGCTAAC
CTAGCCTCCTCCGTCCCTCGTGACCAACAAGGGGTAGTACAGGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTC
ACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCT
TCGTCCACACCTGCTTGCGCGGGTGCTTCCCTCTAAGGCGGAACGCTCCCCTACCGATGCATTTTTACATCCCACAGCTTCGGCAGATCGCTTAGCCCCG
TTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTG