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Detailed information on CNT30332506


BLAST search results

BLAST vs Swiss-Prot:
sp|A6MMK8|YCF3_DIOEL, E-value = 9e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Dioscorea rotundataOryza sativa53.578.7790.37488forward
CNT30529029Dioscorea rotundataEucalyptus grandis34.1415.1986.17311forward
CNT30618958Dioscorea rotundataSesamum indicum51.598.4389.57470forward
CNT3020650Dioscorea rotundataCitrullus lanatus48.4125.3486.62441forward
CNT30730408Dioscorea rotundataCorchorus capsularis48.5293.4585.97442forward
CNT30632297Dioscorea rotundataVigna unguiculata48.7425.1187.16444forward
CNT30201080Dioscorea rotundataPisum sativum48.4122.1588.44441forward
CNT3047566Dioscorea rotundataPrunus dulcis44.3520.9486.39404forward
CNT3094383Dioscorea rotundataSolanum tuberosum12.7353.9586.21116reverse complement
CNT30194121Dioscorea rotundataSecale cereale51.8152.7488.14472forward
CNT30390237Dioscorea rotundataTriticum turgidum33.2614.0291.42303forward
CNT30589320Dioscorea rotundataMusa acuminata12.423.2595.58113forward
CNT30237795Dioscorea rotundataBrassica oleracea32.937.8286300forward
CNT30510912Dioscorea rotundataSolanum lycopersicum25.5899.1584.98233forward
CNT30556045Dioscorea rotundataOryza glaberrima53.5714.9590.37488forward
CNT30171250Dioscorea rotundataTrifolium pratense10.3225.7594.6894forward
CNT30598583Dioscorea rotundataFraxinus excelsior29.4226.9188.06268forward
CNT30445979Dioscorea rotundataSaccharum spontaneum42.0497.4688.77383forward
CNT3017916Dioscorea rotundataZea mays53.5723.6787.91488forward
CNT30232528Dioscorea rotundataAnanas comosus80.937.2486.97737forward
CNT30217417Dioscorea rotundataKalanchoe fedtschenkoi41.8281.4189.24381forward
CNT30655373Dioscorea rotundataRosa chinensis48.7410.686.71444forward
CNT30627898Dioscorea rotundataDaucus carota50.1614.8587.09457forward
CNT30595954Dioscorea rotundataOryza meridionalis48.9633.9791.03446forward
CNT30360010Dioscorea rotundataLactuca sativa22.8319.3785.1208forward
CNT30430934Dioscorea rotundataPapaver somniferum81.0111.387.13738forward
CNT3057361Dioscorea rotundataAmborella trichopoda35.246.3889.41321forward
CNT3022800Dioscorea rotundataPopulus trichocarpa37.3210084.12340forward
CNT30149145Dioscorea rotundataBrachypodium distachyon53.5727.1788.11488forward
CNT30103542Dioscorea rotundataOryza rufipogon42.0454.0289.3383forward
CNT30116311Dioscorea rotundataOryza nivara11.532887.62105forward
CNT30604206Dioscorea rotundataOryza punctata21.348.7492.27194forward
CNT30550879Dioscorea rotundataOryza brachyantha10.3223.4488.394reverse complement
CNT30114189Dioscorea rotundataFicus carica50.2711.6388.86458forward

Expression of CNT30332506

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MCFNIITWGKPYSLFPILSSLIEPSLCNFRITS*

Sequence

>CNT30332506
TCCTATAAAATACCATACAATAATGATTTTAGAAGGAAGAGGGATATAATGAAATTCTTGATTGGATCTCATCATAGGATATAATCTATTTTATTTTATT
TGATTAATGGATCCAACAACCCATTTTAATGAATTAAAAAGAAAAAAGAGAATGATCTTATTCGAATTCTAAACGTCTCGTAATCTTCAACCAATTATGT
GCTTCAATATAATTACCTGGGGTAAGCCCTATAGCCTGTTTCCAATACTCAGCAGCCTGATCGAACCAAGCCTCTGCAATTTCAGAATCACCTCGTAGAA
TGGCCCGTTCTCCCTGGTCGGAATAGATCACGGCCATATTATTAAAAGCTTGCGGTAAGAATGGATTTCGTTCTATTGCCTGGAAATAATATTCCAAAGC
CTTTGTATGCTCTCCGTTGCTTGTGTGTATAAGGCCTATGTTATAGAGTATATAACTTCGATCATAGGGATCAATTTCTGATCGTGTAGCTTCATAATAA
TTCTGCAAAGCTTCTGCATAATTTCCTTCCGATTGAGCTGACATCCGTTACGGTCGTTCATTTTATGCAAAGAATCTCCGTTCCAGAACTGTACGTGAAA
TTTTCATTTCATACGGCTCCTCCCTTCAGTGCATAGTACTAAGTAATCCATGCAATCCAAAATTTACTAGTTTCATTATGAACTAAGAGGGGCTAGTATT
TTTACAAGAAATTTCTAGCCAACCTCCCTGCCAGAGGTTTTTTCCTTTCTTAACACTAATCTATTTTTATATAGAAATAGTAACTCCAACAATTTCTTTG
TACTCAACGCCCCCTATTTTCAGGAATTAGTCACTTTAACGGTCTTTGATGGTTATATGGATATCCAAAGTACAAACGAGATGGATGTTTGTTGTCCTAA
CCATTCTTCTT