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Detailed information on CNT30332479


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 2e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Dioscorea rotundataSetaria viridis36.0413.7187.25102forward
CNT30532843Dioscorea rotundataEucalyptus grandis39.9315.4483.19113forward
CNT30316236Dioscorea rotundataCorylus avellana39.9324.6281.42113forward
CNT30547527Dioscorea rotundataIpomoea triloba47.3530.9582.09134forward
CNT30513000Dioscorea rotundataJuglans regia34.2819.485.5797forward
CNT30372986Dioscorea rotundataArabidopsis thaliana36.7510.1884.62104forward
CNT30276060Dioscorea rotundataChenopodium quinoa39.9317.8284.96113forward
CNT3019597Dioscorea rotundataCitrullus lanatus52.6519.9283.89149forward
CNT30728649Dioscorea rotundataCorchorus capsularis48.4112.5882.48137forward
CNT30405825Dioscorea rotundataBeta vulgaris31.138.4382.9588forward
CNT30711584Dioscorea rotundataGlycine max24.389.891.369forward
CNT3045373Dioscorea rotundataPrunus dulcis35.3412.7684100forward
CNT30191206Dioscorea rotundataSecale cereale49.8211.5285.82141forward
CNT30300473Dioscorea rotundataTriticum aestivum49.8214.5785.82141forward
CNT30224354Dioscorea rotundataHordeum vulgare42.0522.9385.71119forward
CNT30395070Dioscorea rotundataTriticum turgidum39.9314.7784.96113forward
CNT30561656Dioscorea rotundataActinidia chinensis39.938.0784.96113forward
CNT3085191Dioscorea rotundataVigna radiata32.5112.8385.8792forward
CNT30510505Dioscorea rotundataSolanum lycopersicum39.9310.4184.96113forward
CNT30552635Dioscorea rotundataOryza glaberrima35.699.7386.14101forward
CNT30143941Dioscorea rotundataMedicago truncatula29.3318.5390.3683forward
CNT30441158Dioscorea rotundataAegilops tauschii49.8218.5885.82141forward
CNT30309793Dioscorea rotundataCamelina sativa44.5216.283.33126forward
CNT3059659Dioscorea rotundataArabidopsis lyrata36.7523.9684.62104forward
CNT30612508Dioscorea rotundataArabis alpina37.814.2284.11107forward
CNT30137280Dioscorea rotundataLolium perenne34.6321.7384.6998forward
CNT3015270Dioscorea rotundataZea mays81.2750.7783.04230forward
CNT30605685Dioscorea rotundataGossypium raimondii35.3413.0982100forward
CNT30683923Dioscorea rotundataTriticum urartu42.0513.0183.19119forward
CNT30345702Dioscorea rotundataEragrostis tef45.2315.8489.84128forward
CNT30361520Dioscorea rotundataSorghum bicolor45.5818.8686.82129forward
CNT30596122Dioscorea rotundataOryza meridionalis42.0517.283.19119forward
CNT30369654Dioscorea rotundataOryza glumipatula35.6911.4886.14101forward
CNT30107537Dioscorea rotundataOryza longistaminata39.9312.385.84113forward
CNT30149525Dioscorea rotundataBrachypodium distachyon28.9827.1585.3782forward
CNT30100260Dioscorea rotundataOryza rufipogon44.1717.4188125forward
CNT30576103Dioscorea rotundataOryza barthii42.0534.4987.39119forward
CNT30497456Dioscorea rotundataDigitaria exilis25.0924.3287.3271forward
CNT30116094Dioscorea rotundataOryza nivara35.6911.4886.14101forward
CNT30604019Dioscorea rotundataOryza punctata37.8131.6685.05107forward

Expression of CNT30332479

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTLLAVGITWPPPLWIASACKTTSHTSKHMP

>peptide 2 (93 aa)
PQCAGETKGLDDREVGFDVVQWGSGPLHLFKYVASLLVQNTIDASKCLLRFKKSRLGSQLGSINDSSCGWNNLATTPVDSISVQDNIAHLKAYA

>peptide 3 (43 aa)
MGFRASASLQIRGLASGSEHHRCLQVLAQVQEVEAWQSAGKHK*

Sequence

>CNT30332479
CCTCAGTGTGCTGGAGAAACCAAAGGACTCGATGACAGGGAGGTAGGCTTTGATGTTGTACAATGGGGTTCCGGGCCTCTGCATCTCTTCAAATACGTGG
CCTCGCTTCTGGTTCAGAACACCATAGATGCCTCCAAGTGCTTGCTCAGGTTCAAGAAGTCGAGGCTTGGCAGTCAGCTGGGAAGCATAAATGACTCTTC
TTGCGGTTGGAATAACCTGGCCACCACCCCTGTGGATAGCATCAGCGTGCAAGACAACATCGCACACCTCAAAGCATATGCCC