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Detailed information on CNT30331625


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672164Dioscorea rotundataSetaria viridis73.5828.1695.3234forward
CNT30702366Dioscorea rotundataQuercus lobata29.879.5496.8495reverse complement
CNT30378673Dioscorea rotundataArabidopsis thaliana73.5818.7795.73234reverse complement
CNT30283003Dioscorea rotundataChenopodium quinoa73.5824.596.15234reverse complement
CNT3020470Dioscorea rotundataCitrullus lanatus23.5813.9198.6775reverse complement
CNT30406993Dioscorea rotundataBeta vulgaris26.121.4585.5483reverse complement
CNT30505560Dioscorea rotundataNicotiana attenuata73.5810.5897.01234reverse complement
CNT30162096Dioscorea rotundataPistacia vera33.3335.6999.06106reverse complement
CNT3089926Dioscorea rotundataSolanum tuberosum73.5810.5894.87234reverse complement
CNT30306129Dioscorea rotundataTriticum aestivum73.5818.897.44234forward
CNT30219690Dioscorea rotundataHordeum vulgare73.5834.1697.44234reverse complement
CNT30543267Dioscorea rotundataBrassica napus101.2623.5795.96322forward
CNT30508923Dioscorea rotundataSolanum lycopersicum29.8728.4496.8495forward
CNT30554477Dioscorea rotundataOryza glaberrima29.8713.1498.9595reverse complement
CNT30147396Dioscorea rotundataMedicago truncatula73.587.8797.01234forward
CNT30437461Dioscorea rotundataAegilops tauschii73.5886.6797.01234reverse complement
CNT30600960Dioscorea rotundataFraxinus excelsior55.3519.4985.23176forward
CNT30605073Dioscorea rotundataGossypium raimondii73.5815.3994.44234reverse complement
CNT3067934Dioscorea rotundataLeersia perrieri17.324.1290.9155reverse complement
CNT30208772Dioscorea rotundataHelianthus annuus29.8717.5696.8495forward
CNT30713193Dioscorea rotundataMalus domestica golden37.115.6997.46118forward
CNT30346086Dioscorea rotundataEragrostis tef73.5830.8797.44234forward
CNT30359771Dioscorea rotundataLactuca sativa73.5822.3996.58234forward
CNT30429739Dioscorea rotundataPapaver somniferum72.337.1596.09230forward
CNT30571801Dioscorea rotundataVitis vinifera73.5817.9397.01234reverse complement
CNT3056076Dioscorea rotundataAmborella trichopoda73.5810.1790.17234forward
CNT30320583Dioscorea rotundataAsparagus officinalis28.628.310091forward
CNT30118993Dioscorea rotundataCitrus clementina22.9620.7494.5273forward
CNT3038324Dioscorea rotundataCucumis melo73.5812.4196.58234reverse complement
CNT3099709Dioscorea rotundataOryza rufipogon73.5810.7597.44234forward
CNT30557400Dioscorea rotundataPanicum hallii73.5817.0695.73234forward
CNT3039925Dioscorea rotundataMarchantia polymorpha73.5847.1893.59234forward

Expression of CNT30331625

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MEAPVNGGSNSNCPKVGSSVDSARERNGISLPDCETDWSNRDESR

Sequence

>CNT30331625
AAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTCTTGATTAGGAAAGCGGCACAGACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTC
TGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGGTAAACG
GCGGCAGTAACTCTAACTGTCCTAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAA
CAGAGACGAAAGTCGGCC