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Detailed information on CNT30331117


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 3e-50

BLAST vs NONCODE:
NONBNAT006984, E-value = 5e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Dioscorea rotundataSetaria viridis1739.3681.37161forward
CNT30523218Dioscorea rotundataSetaria italica30.6253.1178.62290forward
CNT30318271Dioscorea rotundataCorylus avellana32.2130.7578.03305forward
CNT30546681Dioscorea rotundataIpomoea triloba28.9358.379.56274forward
CNT30701199Dioscorea rotundataQuercus lobata26.522.7881.67251forward
CNT30617135Dioscorea rotundataSesamum indicum23.9722.6381.5227forward
CNT3069058Dioscorea rotundataQuercus suber19.2220.881.87182forward
CNT30196946Dioscorea rotundataPisum sativum15.2120.1183.33144forward
CNT30712284Dioscorea rotundataGlycine max16.2632.7779.87154forward
CNT30186872Dioscorea rotundataSecale cereale32.3161.3280.39306forward
CNT30305698Dioscorea rotundataTriticum aestivum31.5754.8680.94299forward
CNT30219776Dioscorea rotundataHordeum vulgare16.3736.8280.65155forward
CNT30394717Dioscorea rotundataTriticum turgidum32.3160.7179.41306forward
CNT30563984Dioscorea rotundataActinidia chinensis15.7371.6381.88149forward
CNT3086283Dioscorea rotundataVigna radiata33.5821.481.13318forward
CNT30553196Dioscorea rotundataOryza glaberrima22.0737.4679.9209forward
CNT30441099Dioscorea rotundataAegilops tauschii32.3159.380.07306forward
CNT30255921Dioscorea rotundataAvena sativa32.2154.2781.64305forward
CNT30664208Dioscorea rotundataTriticum dicoccoides32.3160.8379.74306forward
CNT3059678Dioscorea rotundataArabidopsis lyrata18.937.2179.33179forward
CNT3082467Dioscorea rotundataBrassica juncea24.0831.880.26228forward
CNT30611328Dioscorea rotundataArabis alpina19.2239.9180.22182forward
CNT30449779Dioscorea rotundataSaccharum spontaneum32.4236.4279.48307forward
CNT30139599Dioscorea rotundataLolium perenne32.3164.0280.72306forward
CNT30229571Dioscorea rotundataAnanas comosus11.6226.783.64110forward
CNT30211420Dioscorea rotundataHelianthus annuus27.4652.4279.62260forward
CNT30687044Dioscorea rotundataTriticum urartu29.3627.2879.86278forward
CNT30720165Dioscorea rotundataTriticum spelta10.6721.5484.16101forward
CNT30348363Dioscorea rotundataEragrostis tef32.2154.7678.69305forward
CNT30357929Dioscorea rotundataLactuca sativa23.655081.25224forward
CNT30370989Dioscorea rotundataOryza glumipatula15.9524.1681.46151forward
CNT30645276Dioscorea rotundataCannabis sativa22.0738.780.86209forward
CNT3052246Dioscorea rotundataAmborella trichopoda28.1922.1678.65267forward
CNT3024855Dioscorea rotundataPopulus trichocarpa33.0553.3284.03313forward
CNT30325970Dioscorea rotundataAsparagus officinalis33.2645.6581.27315forward
CNT30147953Dioscorea rotundataBrachypodium distachyon32.8435.7980.39311forward
CNT30101647Dioscorea rotundataOryza rufipogon30.6231.1278.97290forward
CNT30496126Dioscorea rotundataDigitaria exilis31.5743.9778.26299forward
CNT30117618Dioscorea rotundataOryza nivara21.4445.1180.3203forward

Expression of CNT30331117

Peptides detected in this lncRNA

>peptide 1 (30 aa)
FAIQMYCFPHEKFRHEINSSGQIQQKQHSY*

>peptide 2 (43 aa)
LQSKCIVFLMKSSDMKSIPQVKFNKSNIPIRDFHSQTKTIIQI*

>peptide 3 (35 aa)
MTTVFIEKVWRMLLQRVRSKMSFLKRCSPLIRNTST

>peptide 4 (77 aa)
MLRVRHRISDNILKEYLKNTTRLLVDQPTYPLHSATASQAANCRLGDALNVITQYLAMTLRSSLAKPFASLPTSRHR*

Sequence

>CNT30331117
CTTTGCAATCCAAATGTATTGTTTTCCTCATGAAAAGTTCAGACATGAAATCAATTCCTCAGGTCAAATTCAACAAAAGCAACATTCCTATTAGAGATTT
CCATTCACAAACTAAGACAATCATTCAAATATAAAAGACCATAAAAATCACCCAATTTTGAAGAAACAACCAGAATTTAACTAATTATAAAAGAAATCCT
TTCCTAAATAAAGGAACAATTAGATTGAGGAAAGCACAATCACACCAATCCAAGAAACATTGATAAACTTGCCAACATTCTTAATGATTGATTCCATGAT
GTTCAGTATGAAACCCTAAAAAGCACATAAAAACTGGATCTACAAAACAGCAGCATTACATCATCCAACAGAACCCAGAACTAAGAACACTAAAAATTTC
TCTTTTTTTTGAAAGCAAGACTATTTGCGGGAATACCTAACCACCGAAACCATAGAGAGTGCGTCCCTGACGCTTAAGCGCGTACACCACATCCATCGCC
GTCACAGTCTTCCGGCGAGCATGCTCCGTGTACGTCACCGCATCTCGGATAACATTCTCAAGGAATATCTTAAGAACACCACGCGTCTCCTCGTAGATCA
GCCCACTTATCCGCTTCACTCCGCCACGGCGAGCCAGGCGGCGAATTGCCGGCTTGGTGATGCCTTGAATGTTATCACGCAGTACCTTGCGATGACGCTT
CGCTCCTCCCTTGCCAAGCCCTTTGCCTCCCTTCCCACGTCCCGACATCGCTGAAGGATCGGCGAATTCACTGATTTAAGCTCAAAAGCACCGCTAAGGT
TTGGCAATTGGAGACGAAGACGATGATGAATTGGGGACGATGACCACCGTATTTATAGAAAAGGTTTGGAGAATGCTTCTTCAAAGAGTTCGATCCAAGA
TGAGCTTTTTAAAACGTTGTTCACCGTTGATCAGAAACACATCAACG