« Back to Dioscorea rotundata search


Detailed information on CNT30330555


BLAST search results

BLAST vs Swiss-Prot:
sp|Q942F8|SAP2_ORYSJ, E-value = 3e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672179Dioscorea rotundataSetaria viridis43.0439.5882.71133forward
CNT30523258Dioscorea rotundataSetaria italica30.428.4286.1794forward
CNT30533125Dioscorea rotundataEucalyptus grandis25.8915.3887.580forward
CNT30444092Dioscorea rotundataAegilops tauschii36.8914.0985.09114forward
CNT30255362Dioscorea rotundataAvena sativa30.18.0787.193forward
CNT30449351Dioscorea rotundataSaccharum spontaneum31.0714.5287.596forward
CNT3067877Dioscorea rotundataLeersia perrieri32.369.4685100forward
CNT30572839Dioscorea rotundataVitis vinifera25.2431.285.978forward
CNT30102874Dioscorea rotundataOryza rufipogon27.839.7987.2186forward
CNT30580811Dioscorea rotundataEchinochloa crusgalli43.0413.0683.46133forward
CNT30117496Dioscorea rotundataOryza nivara27.839.387.2186forward

Expression of CNT30330555

Peptides detected in this lncRNA

>peptide 1 (88 aa)
SNPNDLRRPDNRILPGDRRLAGRLVIEAAIVPIGVPVIAAKQLAAPAPEPHQPHPFSTPRAPTHRFGRQFSGTWSSISFFSLCAMDDG*

Sequence

>CNT30330555
TCAAATCCGAACGATCTTCGCCGCCCTGACAACCGGATTCTCCCTGGCGATCGCCGCCTTGCCGGCCGCCTTGTAATCGAAGCTGCAATCGTGCCGATCG
GAGTACCGGTGATCGCCGCAAAACAGCTCGCCGCACCGGCACCGGAACCCCATCAACCCCACCCTTTTTCTACACCCCGCGCACCGACTCACCGCTTTGG
ACGGCAGTTCTCGGGCACTTGGAGCTCCATCTCCTTCTTCTCTCTTTGCGCCATGGATGATGGATGATAAGCTCTGGGGTTATGGCTAGGGTTAGGGTTT
TGGGGAATT