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Detailed information on CNT30330410


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 1e-178

BLAST vs NONCODE:
NONMTRT002043, E-value = 7e-118

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30145248Dioscorea rotundataMedicago truncatula85.4638.6183.77758forward
CNT30572920Dioscorea rotundataVitis vinifera77.5670.9384.45688forward
CNT30120117Dioscorea rotundataCitrus clementina65.1685.1382.87578forward

Expression of CNT30330410

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSSVMVFPVRVFTKICIPPRSRRTR*

>peptide 2 (31 aa)
MVSELSTSSVMVFPVRVFTKICIPPRSRRTR*

>peptide 3 (31 aa)
MVSELSTSSVIVLPVRVFTKICMPPRRRRTR*

>peptide 4 (51 aa)
DKEISNDTKSIVWNTNIKELKLVATSHSIIHIKRDNSFSKHHHEDEEQGEG*

Sequence

>CNT30330410
GACAAAGAAATCAGCAACGATACCAAGTCTATAGTTTGGAACACAAACATAAAAGAACTAAAACTAGTAGCAACAAGCCATAGCATTATTCATATAAAGC
GAGATAATAGTTTCAGCAAGCACCACCACGAAGACGAAGAACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCCAAGGTACGGCCGTCTTCT
AGCTGCTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTTGCCTTCACATTGTCAATGGTGTCGGAACTTTCCA
CTTCCAGCGTAATGGTTTTCCCAGTCAGAGTTTTCACAAAGATCTGCATACCACCACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGAATATT
GTAATCAGCCAAGGTACGGCCGTCTTCTAGCTGCTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTTGCCTTC
ACATTGTCAATGGTGTCGGAACTTTCCACTTCCAGCGTAATGGTTTTCCCAGTCAGAGTTTTCACAAAGATCTGCATACCACCACGAAGTCGGAGAACAA
GGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCAAGAGTCCTGCCATCTTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAAT
GCCCTCCTTGTCTTGAATCTTAGCCTTCACATTGTCTATGGTGTCGGAGCTTTCCACTTCCAGTGTAATAGTTTTACCTGTCAGGGTCTTTACAAAGATT
TGCATGCCACCACGCAGACGAAGAACAAGATGAAGGGTGGACTCCTTCTGGATATTATAGTCAGCCAGTGTTCTTCCATCCTCCAGC