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Detailed information on CNT30330398


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-131

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406245Dioscorea rotundataBeta vulgaris68.999.2383.46647forward
CNT30200107Dioscorea rotundataPisum sativum85.5290.6382.44803forward
CNT30709517Dioscorea rotundataGlycine max85.5286.4483.31803forward
CNT30605389Dioscorea rotundataGossypium raimondii96.792.0981.28908forward
CNT30625880Dioscorea rotundataDaucus carota96.775.1782.16908forward
CNT30595410Dioscorea rotundataEragrostis curvula94.8965.3283.84891forward
CNT30723701Dioscorea rotundataLupinus angustifolius72.7438.983.31683forward

Expression of CNT30330398

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPSLSWIFVLTLSIVSELSTSRVMVFPVSVLTKI

>peptide 2 (31 aa)
MVSELSTSRVMVLPVSVFTKICMPPRSRRTR*

>peptide 3 (30 aa)
MVFPVRVLTKICIPPRRRRTRWRVDSFWML*

>peptide 4 (60 aa)
MKGGLLLDVIVCQCPPVVKLFSRKYEPLLVRRNAFLVLDLCLDIVNCVRALYLQGNGLSS*

>peptide 5 (61 aa)
MSLCWSGGMPSLSWIFVLTLSIVSELSTSRVMVFPVRVFTKICMPPRRRRTRWRVDSFWML*

Sequence

>CNT30330398
ATTTAAAGCAAGTCATATTGTCTAGTTAGCGCCACCACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGTATATTGTAGTCAGCCAAGGTGCGA
CCATCGTCAAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGGGGTATGCCCTCCTTATCTTGAATCTTGGCCTTCACATTATCAATGGTGTCGG
AACTCTCAACCTCAAGAGTAATGGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCATGCCACCTCGCAGCCGAAGAACAAGATGAAGGGTGGACTCCTT
CTGGATGTTATAGTCTGCCAGTGTCCTCCCGTCGTCAAGTTGTTTTCCCGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGGATC
TTTGTCTTGACATTGTCAATTGTGTCCGAGCTCTCTACCTCCAGGGTAATGGTCTTTCCAGTTAGAGTCTTCACGAAGATCTGCATGCCGCCCCGTAGGC
GGAGAACCAGGTGGAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAAAGTCCGGCCATCCTCTAATTGTTTGCCAGCAAAGATAAGCCTCTGCTGGTC
AGGAGGAATCCCTTCCTTGTCTTGGATCTTTGCCTTGACATTGTCAATAGTGTCTGAGCTCTCTACCTCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTA
ACAAAGATTTGCATACCTCCACGAAGACGGAGAACCAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGCCAAGGTTCGGCCATCCTCAAGTTGCT
TACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGGATCTTTGTCTTGACATTGTCAATAGTGTCTGAGCTCTCTACCTCAAG
AGTGATGGTCTTTCCAGTTAGTGTCTTAACAAAGATCTG