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Detailed information on CNT30330123


BLAST search results

BLAST vs Swiss-Prot:
sp|P28551|TBB3_SOYBN, E-value = 8e-118

BLAST vs NONCODE:
NONBNAT005393, E-value = 2e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Dioscorea rotundataOryza sativa24.7543.9884.13252forward
CNT30675224Dioscorea rotundataSetaria viridis31.4338.5186.25320forward
CNT30522155Dioscorea rotundataSetaria italica20.732485.78211forward
CNT30641074Dioscorea rotundataNymphaea colorata29.6782.2983.11302forward
CNT30516889Dioscorea rotundataJuglans regia15.4225.9583.44157forward
CNT30377201Dioscorea rotundataArabidopsis thaliana44.7979.7284.21456forward
CNT30728062Dioscorea rotundataCorchorus capsularis34.3840.1885.14350forward
CNT30381383Dioscorea rotundataManihot esculenta25.3414.6882.95258forward
CNT30402401Dioscorea rotundataBeta vulgaris27.0123.1585.09275forward
CNT30629386Dioscorea rotundataVigna unguiculata7.7630.6286.0879forward
CNT30196370Dioscorea rotundataPisum sativum34.5836.9482.95352forward
CNT30486254Dioscorea rotundataOlea europaea18.1748.389.19185forward
CNT30708222Dioscorea rotundataGlycine max29.1773.784.18297forward
CNT30291318Dioscorea rotundataTriticum aestivum17.5853.7587.71179forward
CNT30223001Dioscorea rotundataHordeum vulgare15.4256.4787.26157forward
CNT30567082Dioscorea rotundataActinidia chinensis27.964.5583.1284forward
CNT30542792Dioscorea rotundataBrassica napus26.7262.6783.46272forward
CNT30442409Dioscorea rotundataAegilops tauschii20.4331.0486.06208forward
CNT30252641Dioscorea rotundataAvena sativa33.7942.3185.17344forward
CNT30261872Dioscorea rotundataBrassica rapa32.3237.1883.59329forward
CNT30614070Dioscorea rotundataArabis alpina32.1223.6684.1327forward
CNT3015820Dioscorea rotundataZea mays29.6766.0884.11302forward
CNT30608822Dioscorea rotundataGossypium raimondii32.0248.6683.74326forward
CNT30209019Dioscorea rotundataHelianthus annuus34.9742.6385.11356forward
CNT30627268Dioscorea rotundataDaucus carota35.0728.8480.11357forward
CNT30681848Dioscorea rotundataTriticum urartu32.6137.5187.35332forward
CNT30341625Dioscorea rotundataEragrostis tef33.635.0883.92342forward
CNT30368415Dioscorea rotundataSorghum bicolor28.1927.8986.06287forward
CNT30595566Dioscorea rotundataOryza meridionalis16.633.686.98169forward
CNT30370114Dioscorea rotundataOryza glumipatula33.641.7683.63342forward
CNT30570854Dioscorea rotundataVitis vinifera14.9375.6290.13152forward
CNT30706519Dioscorea rotundataPrunus avium26.1332.0986.84266forward
CNT3033661Dioscorea rotundataTheobroma cacao19.7496.6389.05201forward
CNT3057373Dioscorea rotundataAmborella trichopoda20.8338.983.49212forward
CNT3021874Dioscorea rotundataPopulus trichocarpa33.260.7984.91338forward
CNT30322043Dioscorea rotundataAsparagus officinalis34.0941.4682.71347forward
CNT3099978Dioscorea rotundataOryza rufipogon20.8326.1787.74212forward
CNT30575530Dioscorea rotundataOryza barthii33.637.8783.63342forward

Expression of CNT30330123

Peptides detected in this lncRNA

>peptide 1 (31 aa)
VHSLAGVPMQKGLPPEHGGELLADPPEHLLD*

>peptide 2 (61 aa)
MFLESHICWVSSGTVRGAKPTMKKWRRGKGIRLTASLRRSELSWPGKRRQHVMPLMVAEIR*

>peptide 3 (64 aa)
SIPSPVYQCRKAFLLNMAVNCSLTLRNISWIEVEFPMNVDAILIPLGGMSHTLDLTLLGIHSTK*

>peptide 4 (79 aa)
MSGVCGTHHVLGIPHLLGEFRYGQRCKTNHEEVEAREGNQVNSEFTEVRIELARETEAACDATHGGRDQMIKITNCNNK*

Sequence

>CNT30330123
GTCCATTCCCTCGCCGGTGTACCAATGCAGAAAGGCCTTCCTCCTGAACATGGCGGTGAACTGCTCGCTGACCCTCCGGAACATCTCCTGGATTGAGGTC
GAGTTCCCGATGAATGTGGATGCCATTTTGATACCTTTGGGTGGGATGTCACACACACTGGACTTGACATTGTTGGGGATCCACTCGACAAAGTAGGAAG
AGTTCTTGTTCTGAACATTGATCATTTGTTCATCGACCTCTTTGGTGCTCATTTTACCACGGAACATGGCTGAGGCTGTGAGGTAGCGCCCATGTCGGGG
GTCTGCGGCACACATCATGTTCTTGGAATCCCACATTTGCTGGGTGAGTTCAGGTACGGTCAGAGGTGCAAAACCAACCATGAAGAAGTGGAGGCGAGGG
AAGGGAATCAGGTTAACAGCGAGTTTACGGAGGTCAGAATTGAGCTGGCCAGGGAAACGGAGGCAGCATGTGATGCCACTCATGGTGGCAGAGATCAGAT
GATTAAGATCACCAACTGCAACAATAAGTAGAGAGCATGATGAAACACAAAATAGATTTCAAGAAAGAAGACTTTCACACTATGCTGTAAACAAGAGCAC
CACTTCGTTATGAGCATGCCAGGTACCATTCCATTTAACCAACAGAAGTGAAGGAGAACTGAAGCTCTTTAACATCAGGAAATAAAGAAAATATTATTCA
TTCAAACAATTGCATAGCCAAATTTTAAGTTATTCAATTGAAAAAGTTTAAAAAAAGTTTAAAAAGGATCATAATGTAGGATTACCAGTGGAGCACAAAT
TTCATTGTCATATAGAATAGCATAAAACTGATTATTCAATACAGTAATGATTCAATTAAAGTTTTATTTAGCAGGAAAAGGATTAGCCAAACTCAGACTT
ACCATCATAAGTAGGAATAGATAACTTTGAAAAACATGAAAACGATTGATTTGAAGTGTTTTACTTTGTCTTTGGTCATTATAATAAGATCATCAATTTC
AATTACAGAACTTCAGAA