Detailed information on CNT30330082


BLAST search results

BLAST vs Swiss-Prot:
sp|P12332|CB21_SILLB, E-value = 8e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512563Dioscorea rotundataJuglans regia54.119.1883.45290forward
CNT30605341Dioscorea rotundataGossypium raimondii55.2227.1383.45296forward
CNT3040650Dioscorea rotundataMarchantia polymorpha52.9921.2983.8284forward

Expression of CNT30330082

Peptides detected in this lncRNA

>peptide 1 (40 aa)
METRPLPPTDWRAKGTALPAREGEERAMVAIAVVVEELEM*

>peptide 2 (40 aa)
MLQALPTGSGSLPTPCSSRMSQGQQRAQQCPSHSLRGIHQ*

>peptide 3 (33 aa)
MVVLNTVWAVPWATRGSWPATGLPHGDTAIATD*

>peptide 4 (55 aa)
VPLNGAHENHLACPDGKDALSMDETWVAEIIQATLTEDLRSGLEPDSLAELHSVP*

>peptide 5 (47 aa)
MGYQRQLACHRSSSWRHGHCHRLIGGQRGLPCRREKERREPWLPLLL*

Sequence

>CNT30330082
GTACCCCTCAACGGCGCCCATGAGAATCACCTGGCATGCCCAGATGGCAAGGATGCTCTGAGCATGGATGAGACTTGGGTTGCCGAGATAATCCAAGCCA
CCCTCACTGAAGATCTGAGATCCGGCCTTGAACCAGACAGCCTCGCCGAACTTCACTCCGTTCCTTGAAAGGAGCTCAGGGAAGACACAGCCCAATGCTC
CAAGCATTGCCCACCGGCAGTGGATCACTTCCAACTCCCTGTTCTTCGCGAATGTCTCAGGGTCAGCAGAGAGCCCAGCAGTGTCCCAGCCATAGTCTCC
GGGGAATTCACCAGTGAGGTAGGATGGTGGTACTTAACACGGTCTGGGCCGTACCATGGGCTACCAGAGGCAGCTGGCCTGCCACCGGTCTTCCTCATGG
AGACACGGCCATTGCCACCGACTGATTGGCGGGCAAAGGGGACTGCCTTGCCGGCGAGAGAAGGAGAGGAGAGAGCCATGGTTGCCATTGCTGTTGTAGT
GGAAGAGTTGGAGATGTGAATGGCTTGCTTTTGGTT