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Detailed information on CNT30329937


BLAST search results

BLAST vs Swiss-Prot:
sp|P50249|SAHH_PHASS, E-value = 6e-55

BLAST vs NONCODE:
NONGMAT001730, E-value = 2e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671211Dioscorea rotundataSetaria viridis11.2955.4583.76117forward
CNT30639595Dioscorea rotundataNymphaea colorata20.4644.9283.02212forward
CNT30221496Dioscorea rotundataHordeum vulgare9.2747.7689.5896forward
CNT30585997Dioscorea rotundataMusa acuminata6.3726.0989.3966forward
CNT30144739Dioscorea rotundataMedicago truncatula10.5223.4983.49109forward
CNT30365573Dioscorea rotundataSorghum bicolor7.8222.9587.6581forward
CNT30354796Dioscorea rotundataLactuca sativa25.8750.9584.33268forward
CNT30570728Dioscorea rotundataVitis vinifera20.7538.4683.26215forward
CNT30103950Dioscorea rotundataOryza rufipogon9.5628.9583.8499forward
CNT3065844Dioscorea rotundataSelaginella moellendorffii8.9826.6588.1793forward

Expression of CNT30329937

Peptides detected in this lncRNA

>peptide 1 (41 aa)
KKDERSETSESSSIGKLNNLAYISIIALQLGIFYITKYIFI*

>peptide 2 (62 aa)
MSKVASPPSSTMRSGPPSGPQSRHLSVHHQYSWRVSPFQANTAAESRAMAAAAWSWVEKMLQE

>peptide 3 (73 aa)
MDLTLLLVTESLTLIAGKRRVPLACIWYNLFTPVPVPDQPEHNLELGVVGGAGIRHLASLLILLLSLNTLVDE*

>peptide 4 (36 aa)
MNTVLEGLGITLDPFQQKCFLLSLQTYRSNTIKDKQ*

Sequence

>CNT30329937
AAAGAAAGATGAAAGATCAGAAACCTCAGAATCTAGCTCTATTGGCAAACTAAATAATTTAGCCTATATTTCAATAATAGCTCTTCAATTGGGAATCTTT
TATATAACAAAATATATTTTTATCTAAATGCTTGAATTTTACAATGATCCATTTGCTTCACTTCAGTTAAAATGAACACTGTGCTTGAAGGCTTGGGTAT
AACATTAGATCCATTTCAGCAAAAGTGCTTTCTTTTATCACTCCAAACTTATAGATCTAACACCATCAAAGACAAACAGTGATCTTTATTTACAAAGCAT
GAAAAAGATACCATTTTGATTAACTAATTGTAAAAAGTAATTGCTGAAAGGATAATGTATATTATACAATTGAAAAAGTAACGGGAAACGGGCACATCTA
ACGTTTAACAAACAGAATCATCAGCACTATTCAATAAATCAGTTTTAAAAAAAATCAGCAATTAAGCATAGTTAAAAAGTAAGAGAAAAGAGCAACAGAT
CTCTGGATCTCTCCAGAATAAGAGTTCGAAGAGGATCCCAAATTCTTAGGCATTAAGAAAGTACAGATCAACACTATTTGAGTGAAATTTAGCGAAGAAA
ATCACCAGATCTGGAACGAAAAATGGAAAAGAGATGGATCTAACCTTGCTCTTGGTGACGGAGTCGTTGACGTTGATCGCTGGGAAGAGGAGGGTTCCGC
TGGCCTGCATCTGGTACAACCTCTTCACACCAGTGCCCGTCCCTGATCAGCCCGAGCACAATCTGGAACTCGGCGTTGTCGGTGGAGCTGGGATCCGGCA
CCTTGCCAGTCTTCTCATACTCCTCCTCAGCCTTAACACCCTCGTGGATGAGTAAAGTGGCATCACCACCATCATCAACGATGAGATCCGGGCCGCCATC
CGGGCCCCAGTCGAGGCACCTTTCCGTGCACCACCAGTACTCCTGGAGGGTCTCGCCCTTCCAGGCGAACACGGCAGCGGAATCACGGGCGATGGCGGCG
GCAGCATGGTCCTGGGTAGAGAAAATGTTACAGGAG