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Detailed information on CNT30329805


BLAST search results

BLAST vs Swiss-Prot:
sp|P32112|SAHH_WHEAT, E-value = 2e-62

BLAST vs NONCODE:
NONBNAT006042, E-value = 5e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Dioscorea rotundataSetaria viridis50.7760.3287.58298forward
CNT30702258Dioscorea rotundataQuercus lobata24.023086.52141forward
CNT30376211Dioscorea rotundataArabidopsis thaliana50.9441.3682.61299forward
CNT30619260Dioscorea rotundataSesamum indicum49.427.2383.79290forward
CNT3020603Dioscorea rotundataCitrullus lanatus23.348.8591.24137forward
CNT3072357Dioscorea rotundataQuercus suber46.3426.4885.29272forward
CNT30380227Dioscorea rotundataManihot esculenta21.1229.7489.52124forward
CNT30402445Dioscorea rotundataBeta vulgaris26.7535.3690.45157forward
CNT30200315Dioscorea rotundataPisum sativum18.0620.5489.62106forward
CNT30505192Dioscorea rotundataNicotiana attenuata21.8122.6581.25128forward
CNT30709695Dioscorea rotundataGlycine max27.4348.290.06161forward
CNT30543653Dioscorea rotundataBrassica napus20.9517.8391.06123forward
CNT30261371Dioscorea rotundataBrassica rapa19.5927.5191.3115forward
CNT30612558Dioscorea rotundataArabis alpina19.0829.7191.07112forward
CNT30607325Dioscorea rotundataGossypium raimondii21.479.7790.48126forward
CNT30231757Dioscorea rotundataAnanas comosus20.9546.7786.99123forward
CNT30720770Dioscorea rotundataTriticum spelta24.724.1789.66145forward
CNT30358660Dioscorea rotundataLactuca sativa19.2520.4384.07113forward
CNT30705212Dioscorea rotundataPrunus avium12.6120.1186.4974forward
CNT3021984Dioscorea rotundataPopulus trichocarpa50.9413.9884.62299forward
CNT30103876Dioscorea rotundataOryza rufipogon51.4566.6788.08302forward
CNT30117878Dioscorea rotundataOryza nivara51.4567.1188.41302forward
CNT30723539Dioscorea rotundataLupinus angustifolius45.3220.982.71266forward

Expression of CNT30329805

Peptides detected in this lncRNA

>peptide 1 (44 aa)
TIKLRALVAPATNIQLLGYIIKHSSQTIAFLFSICSNIRNKTHQ*

>peptide 2 (78 aa)
MLQTMALFFIFFMWSTMIISLLPVVVTTISTSEMTSSKVSTGMPSIKAWRAQMGSISVTITRAPACLRAAAQPLPTSP*

Sequence

>CNT30329805
AGACAATAAAATTGAGAGCATTAGTTGCACCAGCAACAAACATCCAACTACTAGGATACATTATTAAACATTCCTCACAAACCATTGCCTTTCTCTTTTC
TATTTGTTCTAACATTCGAAATAAAACTCATCAGTAAGGATTCAAAAGCAATGAAAAACACAAACATGGATACTGATTGATAGATAGCTTTGGGTGAAAA
AACACAGGCGGGTAGCAAAACAATGGACTTGGTTCTTCTTTCTTCTTTGTTCTTCTTCTTGTTGGAAGGATAGTTCTCCAGCCCGAGCATGTCAATCTCA
TTGTCAAAGTGACCAATGTTGCAGACAATGGCATTGTTCTTCATCTTCTTCATGTGGTCAACCATGATAATATCCTTGTTACCTGTGGTGGTCACAACAA
TATCAACCTCAGAGATGACATCGTCCAAGGTGAGTACAGGGATGCCTTCCATCAAGGCCTGGAGGGCGCAGATGGGATCAATCTCTGTGACGATTACACG
GGCACCTGCCTGCTTGAGAGCAGCAGCACAGCCCTTGCCAACATCACCATAACCACAAACAACAGCAACCTTGCCGGCGATCATCAC