Detailed information on CNT30329354


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533290Dioscorea rotundataEucalyptus grandis23.1917.1482.44205forward
CNT3069045Dioscorea rotundataQuercus suber31.1163.2282.91275forward
CNT30710382Dioscorea rotundataGlycine max22.6231.185200forward
CNT30189069Dioscorea rotundataSecale cereale24.7750.6981.28219forward
CNT30509219Dioscorea rotundataSolanum lycopersicum21.6133.7580.63191forward
CNT30592821Dioscorea rotundataEragrostis curvula11.4347.286.14101forward

Expression of CNT30329354

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MSLPMAAMASLVLSIETPMGVPWKLPPWRALFLETSIKGLSLTELISLSMDLVDMRMTSI*

>peptide 2 (65 aa)
MCSIMAAASIWPGWCFNLCVRWSVYSVPLFMLSITQSLLALTLGRASSESSTVTAFSPAAATAAT*

>peptide 3 (82 aa)
MVLQFVCKVVSVLSTVVHAIHNPITACLDSWPCLIGKLHRHRLLTGGCHRCHLSYLKRSTLKFNNRCSKLLHHLLNFIKMTP*

>peptide 4 (43 aa)
ENKKQITNGKLFAEVVTQKHNFGVASYLTNRYGSTIPVSQTFK*

>peptide 5 (33 aa)
MGAPFQSLKHSSRGSITFPWLMAVNTLSNSSPG*

Sequence

>CNT30329354
TTGAAAACAAGAAACAAATAACCAATGGAAAGCTCTTTGCAGAGGTGGTCACACAGAAACATAACTTTGGTGTTGCAAGCTACCTAACAAATAGGTATGG
GAGCACCATTCCAGTCTCTCAAACATTCAAGTAGAGGATCAATCACCTTCCCCTGGCTGATGGCAGTGAACACCTTGTCAAACTCCTCGCCTGGTTAGAG
GGCAATCCATTGTTGTAGAAATCATTGACAAGCTCAGAGATTTGAGCAAACATGAGCTTGCCGATGGCTGCAATGGCCAGCCTGGTGTTATCCATTGAGA
CACCAATGGGAGTCCCTTGGAAGTTACCGCCATGGAGAGCCTTGTTCCTTGAAACATCAATCAAGGGGTTGTCATTGACTGAGTTGATTTCCCTCTCAAT
GGATTTGGTGGACATGCGAATGACTTCAATTTGAGGACCGAGCCATTGAGGCGAAGTGCGGAGGGCATAACGATCCTGCTTGGGCTTCTGCAGTGGGTCT
TGTTCATGGATCTTTGCGGCCATCTTTCATGTAGGAGCTACCCTCAAGGATGTGTTCCATAATGGCAGCAGCTTCAATCTGGCCTGGATGGTGCTTCAAT
TTGTGTGTAAGGTGGTCAGTGTACTCAGTACCGTTGTTCATGCTATCCATAACCCAATCACTGCTTGCCTTGACTCTTGGCCGTGCCTCATCGGAAAGCT
CCACCGTCACCGCCTTCTCACCGGCGGCTGCCACCGCTGCCACCTGAGCTATCTTAAGAGAAGCACCCTCAAGTTTAACAACAGGTGTTCTAAACTCCTC
CACCATCTTCTTAACTTCATCAAGATGACTCCCTGACATGCTCTCTGCTGCCACCTTCCAGTTCAATGGATCTTTCATGCATAC