Detailed information on CNT3032755


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RWE8|GGAP1_ARATH, E-value = 1e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676252Theobroma cacaoSetaria viridis30.9920.7582.03128forward
CNT30367441Theobroma cacaoSorghum bicolor31.9617.0181.06132forward
CNT30582280Theobroma cacaoEchinochloa crusgalli30.2711.5382.4125forward
CNT30557237Theobroma cacaoPanicum hallii30.2710.0283.2125forward

Expression of CNT3032755

Peptides detected in this lncRNA

>peptide 1 (31 aa)
ISRDSSLHKVEYPLHQWQTKFAYLGYQCHNP*

>peptide 2 (36 aa)
MRPSHHRAVGAFGDSILYFKRLGFSIRCLVVVLPPF*

Sequence

>CNT3032755
AATAAGCAGAGATAGCAGTTTACACAAAGTTGAATATCCTTTACATCAGTGGCAAACTAAGTTTGCTTATTTAGGCTACCAGTGCCATAATCCATAGAAG
GTCTAACACAATCCAAGATACCAAACTGACATAATAGAAACAGAACCCGGAAGGAACAGGGTTTCTATTACTGAATGCCGATTCTCACTGCAGAACAAGG
CATTCATGCGTCCCAGCCACCATAGGGCGGTGGGAGCTTTTGGTGATAGCATTCTCTATTTCAAGAGACTGGGTTTTAGTATCAGATGCCTCGTCGTAGT
CCTTCCTCCTTTTTAACACCATATGACCACTAATTTCCCACACAGCTGGGTTCACCTGGGTGTCCAATAGCTCTGGACTCACTTCCCCAAGAGCTTGTTT
CTCAGCATAACAC