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Detailed information on CNT3032713


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RWE8|GGAP1_ARATH, E-value = 4e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708255Theobroma cacaoGlycine max36.1142.7983.71178forward
CNT30158256Theobroma cacaoPistacia vera34.0827.2786.9168forward
CNT30566740Theobroma cacaoActinidia chinensis35.913.8384.18177forward
CNT30597660Theobroma cacaoFraxinus excelsior23.7323.6884.62117forward

Expression of CNT3032713

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MKPISRDSSLHKVEYPLHQVSITECRFSLQNKAFMRPSHHRAVGAFGDSILYFKRLGFSIRLV*

>peptide 2 (39 aa)
MVSPMAMASKISAFTSRNLSSERETSARSLQAFSSDASS*

Sequence

>CNT3032713
TTATAAGCTCATAACAGCAAACATTACATTGTATTTTACATGATCCAATAAAGTACATCATGAAGCCAATAAGCAGAGATAGCAGTTTACACAAAGTTGA
ATATCCTTTACATCAGGTTTCTATTACTGAATGCCGATTCTCACTGCAGAACAAGGCATTCATGCGTCCCAGCCACCATAGGGCGGTGGGAGCTTTTGGT
GATAGCATTCTCTATTTCAAGAGACTGGGTTTTAGTATCAGGCTCGTCTAGCAGAGTCTCAGCAATGGTTTCGCCAATGGCAATGGCTTCAAAGATAAGT
GCATTCACCTCACGGAACCTCTCCTCAGAGAGAGAAACCTCTGCAAGGAGCCTCCAAGCATTTTCATCAGATGCCTCGTCGTAGTCCTTCCTCCTTTTTA
ACACCATATGACCACTAATTTCCCACACAGCTGGGTTCACCTGGGTGTCCAATAGCTCTGGACTCACTTCCCCAAGAGCTTGTTTCTCAGCAT