Detailed information on CNT30326203


BLAST search results

BLAST vs Swiss-Prot:
sp|Q655S1|FTSH2_ORYSJ, E-value = 1e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673927Asparagus officinalisSetaria viridis37.1343.2780.31254forward
CNT30500314Asparagus officinalisCoffea canephora19.8830.5683.82136forward
CNT30170808Asparagus officinalisPistacia vera30.1230.2183.5206forward
CNT30368286Asparagus officinalisSorghum bicolor35.3830.0680.99242forward
CNT30370555Asparagus officinalisOryza glumipatula35.6724.3580.74244forward
CNT30119340Asparagus officinalisCitrus clementina13.331.9383.5291forward

Expression of CNT30326203

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MSSASFSDIEFLAIILMITSLCAEESVSDHGPISDIPKEITCLAKPVIWIKSPAAPVVTSGSPKITSSAARPPRPPTILAKSCXXXXWPRGTKVTF*

>peptide 2 (40 aa)
MYSDDLSCTYVPITNTLKHHILYTLHQVPTLKGQHEEEHE*

Sequence

>CNT30326203
TATGTATTCTGATGATTTAAGTTGTACATATGTACCAATTACAAATACACTGAAGCACCACATATTATACACTTTACATCAGGTGCCCACTCTCAAAGGG
CAGCATGAAGAAGAACATGAATAACCCTTACAAGCTTCTTTGATTATAGAATTCTAAACAAGGACAGCTGTTGGTGTAGTTGGTGGAACCCTATTCTCAA
CAGGAATCTCCGTAAACTCTGAGAGAATTCCTCTGAACTCATCACCAGTCATCGTCTCCTTCTCAATAAGTATCTCCACAATCTTATCAATCGCTTCTCG
GTTATTTCTGATATGGCTCAAAGCAATCTCATAAGCAGTGTCTGATAACTGCTTCACAGCAGCATCAATGTCCTCTGCTAGCTTCTCTGACATTGAATTC
CTTGCCATCATTCTCATGATCACATCGCTTTGTGCTGAAGAATCCGTTAGTGACCATGGGCCAATCTCAGACATTCCGAAGGAAATTACCTGTTTGGCCA
AACCAGTGATCTGGATCAAATCACCGGCAGCACCAGTGGTGACCTCGGGCTCCCCAAAGATAACCTCCTCAGCAGCTCGGCCTCCAAGACCACCTACTAT
CCTTGCAAAAAGTTGCTGNNNNNNNNNNTGGCCTCGGGGTACTAAGGTGACCTTTTGAACAGCATCATGACCTGGGGTTAAAGT