CANTATAdb - search

Detailed information on CNT3032610

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 4e-142

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-134

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30701196	Theobroma cacao	Quercus lobata	88.63	81.57	82.57	717	forward
CNT3069547	Theobroma cacao	Quercus suber	87.76	102.75	81.83	710	forward
CNT30605497	Theobroma cacao	Gossypium raimondii	87.64	93.54	88.86	709	forward
CNT3025177	Theobroma cacao	Populus trichocarpa	88.38	73.11	85.17	715	forward
CNT30120072	Theobroma cacao	Citrus clementina	88.26	61.39	83.47	714	forward

Expression of CNT3032610

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVFPVKVIVFPVRVFTKICMPPRSRNTKWRVDSF*

>peptide 2 (40 aa)
MVSELSTSKVMVFPVRVFTKICIPPRRRSTKWRVDSFWIL*

>peptide 3 (78 aa)
LLPQIGKIRTQVQLRNHHGGEGQDEGWTPSGYCSQPECDHPPTACQQRSTSAGLEESPPCPESLLSHCQSCLSSQPPG*

>peptide 4 (71 aa)
FCHRLAKLEHKYNLETTTEAKDKMKGGLLLDIVVSQSATILQLLASKDQPLLVWRNPLLVLNLCFHIVNRV*

Sequence

>CNT3032610
CTTTTGCCACAGATTGGCAAAATTAGAACACAAGTACAACTTAGAAACCACCACGGAGGCGAAGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTA
GTCAGCCAGAGTGCGACCATCCTCCAACTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTTTGCTTTCACA
TTGTCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTCAAGGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCATGCCAC
CACGGAGTCGCAACACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAAATTAACCT
CTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGTG
AGAGTTTTCACAAAAATCTGCATTCCACCACGCAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTGCGGCCATCCT
CTAGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTTTC
CACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCATCTGTTAAAGAGATTTGAAAATCGAGATCGGGAGCTTTTCAATCGATGAT
TGAGAGAAA