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Detailed information on CNT30322506


BLAST search results

BLAST vs Swiss-Prot:
sp|Q67X45|CSLA3_ORYSJ, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499723Asparagus officinalisCoffea canephora12.3120.384.26108forward
CNT30195224Asparagus officinalisPisum sativum39.7982.5178.8349forward
CNT30346665Asparagus officinalisEragrostis tef11.2928.2184.8599forward
CNT3022600Asparagus officinalisPopulus trichocarpa32.8425.0480.56288forward

Expression of CNT30322506

Peptides detected in this lncRNA

>peptide 1 (70 aa)
YDLRGRRERATSTNSTKEEDLKKQSFKKKKPQVSASAKKILKFEPLMCLQRGSPMYSSHKGFTRDGEPFG*

>peptide 2 (56 aa)
MRCRLILFEGIGTFRHRNWHTSAMLGKHLKGMMNFPVRRQTAGIMQYARRGMDVKG*

>peptide 3 (45 aa)
TILEDDGKERRRRIRRRRKISRSNLSRKKSPRFQLQRRKFSSLSL*

Sequence

>CNT30322506
TTACGATCTTAGAGGACGACGGGAAAGAGCGACGTCGACGAATTCGACGAAGGAGGAAGATCTCAAGAAGCAATCTTTCAAGAAAAAAAAGCCCCAGGTT
TCAGCTTCAGCGAAGAAAATTCTCAAGTTTGAGCCTTTGATGTGCTTACAAAGGGGTTCTCCTATGTACAGTTCCCACAAAGGTTTCACGAGGGACGGGG
AACCATTTGGGTAACTGGTCAAAGATCAAGGAGCAGCAAACCAGATCTCGCAGATAACTGAGGTGAGCCAAAGGGGATAGGCATCTCTGGCTGGAGCCAT
GATATGAAAAGAAAGAAGAAGAAGACAAGAATGACAAGCCGTAGGACTGAAAATGCGATGTAGATTGATCTTGTTTGAGGGGATCGGCACTTTTCGCCAT
AGGAACTGGCATACCTCGGCCATGCTGGGAAAACATTTGAAAGGAATGATGAATTTTCCGGTAAGAAGGCAGACGGCTGGGATAATGCAGTATGCGAGGA
GAGGGATGGATGTGAAGGGGTAGACGATGGTGTTTGTGTATGCAAACCTCTCTAGCCACTTCAAGTTCCCACCATAACCATACCACAGTGGACAATGCCT
GCTAAGAAAGATCTCCACCGATCCAAGTGCCCACCGAAGTACTTGATGCAACCGATCAGAAAGATTAATTGGAGCTGATCCCTTAAACGCTGCTCTGTTG
GGAACACAGTAGACAGACTTCCATCCTCTGCAGTGCATCTTGAAGCCAGTCAAAATATCCTCCGTTACAGACCCATATATCCAACCAATCTGCAATGCAC
AAAATGACTTTTTTAAGGTGTGTTCATATTAATTTTCATAGAGAAATAGTTTAGCCGTTGTGGCATTTTAATCTAAA