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Detailed information on CNT30322486


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672571Asparagus officinalisSetaria viridis34.9739.0588.41164forward
CNT30393881Asparagus officinalisTriticum turgidum18.9822.0885.3989forward
CNT30587002Asparagus officinalisMusa acuminata34.1259.2690160forward
CNT30511330Asparagus officinalisSolanum lycopersicum47.5554.6683.86223forward
CNT30555589Asparagus officinalisOryza glaberrima57.3615.4287.36269forward
CNT30441013Asparagus officinalisAegilops tauschii26.2334.2686.18123forward
CNT30652852Asparagus officinalisRosa chinensis46.2754.5285.25217forward
CNT30624277Asparagus officinalisDaucus carota41.3640.7686.6194forward
CNT30721746Asparagus officinalisTriticum spelta57.3616.7386.25269forward
CNT30367313Asparagus officinalisSorghum bicolor37.9531.3489.33178forward
CNT30596728Asparagus officinalisOryza meridionalis23.2422.4786.24109forward
CNT30371441Asparagus officinalisOryza glumipatula23.2426.7286.24109forward
CNT30646445Asparagus officinalisCannabis sativa20.6828.1288.6697forward
CNT3054135Asparagus officinalisAmborella trichopoda55.4442.8383.46260forward
CNT3024196Asparagus officinalisPopulus trichocarpa47.5549.1285.65223forward
CNT30150825Asparagus officinalisBrachypodium distachyon40.9432.4388.02192forward
CNT30104395Asparagus officinalisOryza rufipogon38.1736.2388.27179forward
CNT30578506Asparagus officinalisOryza barthii23.246.8686.24109forward
CNT30117442Asparagus officinalisOryza nivara23.2426.7886.24109forward
CNT30725946Asparagus officinalisLupinus angustifolius20.4745.7188.5496forward

Expression of CNT30322486

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MLHRVHSHTTNLGPAVPLDPELVVGVACLEEASPSCPRQRPG

>peptide 2 (33 aa)
MCWWLPPPWGCSTGFIATPRTLGQQFLLTRNLW*

Sequence

>CNT30322486
TTTTTGTTTTTTAGTGGCCCAATAATAAAGTCTCTTCCATTCATCAAACTCAAAATATCCAAAACCGGAAACAACATAAACTAACAAATTCTTCATAAGT
TCCATGAAAACTTTAGAAAGACTAAATAACTTCAAGATCGTAACAACACCCTAGCAAGACAGCAAGCAAACTTATTAATTATCCTAAGCACCCTTCTCAG
CCTTGGAAGCAGTAGCAGCAGCCTGCCCTCTGAGCCGACCGGTTCTCCTAGCAGCAATGAGACCCACCTTTTGACCAGGAGGAGCATCACGGCGAACGGT
GGAGGCGTGACCAATGTGCTGGTGGTTACCACCGCCGTGGGGATGCTCCACAGGGTTCATAGCCACACCACGAACCTTGGGCCAGCAGTTCCTCTTGACC
CGGAACTTGTGGTAGGCGTTGCCTGCCTTGAGGAGGCTTCTCCGTCCTGCCCCCGCCAGCGACCTGGCC