Detailed information on CNT3032243


BLAST search results

BLAST vs Swiss-Prot:
sp|P42048|PSAF_CUCSA, E-value = 1e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30273262Theobroma cacaoChenopodium quinoa36.6413.1778.9218forward
CNT30629192Theobroma cacaoVigna unguiculata17.982082.24107forward
CNT30562394Theobroma cacaoActinidia chinensis34.6232.781.07206forward
CNT3038560Theobroma cacaoCucumis melo33.9549.0380.69202forward

Expression of CNT3032243

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MSATAGCGAERRMEERARAAEKAWSGEAEGDVELLSEDGVLEHTTNDLETLGVTWEFSFGFKSDILGFYISGVPLLL*

>peptide 2 (47 aa)
VHYQMRQPIRATKQPVFPIVVEPSLGFLDGCFDSQSWSAVRGVKIQR*

>peptide 3 (30 aa)
MGFRFWEGETRGGRKDKMQRVRRLSWMVAIG

>peptide 4 (32 aa)
RSLSNEATHQSHKAARISHSCRTFSWFSRWLL*

Sequence

>CNT3032243
CCGTTCACTATCAAATGAGGCAACCCATCAGAGCCACAAAGCAGCCCGTATTTCCCATAGTTGTCGAACCTTCTCTTGGTTTTCTCGATGGTTGCTTTGA
TAGCCAGAGCTGGAGCGCTGTCAGGGGCGTAAAGATTCAACGATGACTCGAGCTTCTTGATCTGCTGCTTTTCACGTTTGGCGAACTGCTTGGACTCCTT
GCATGGGGTGAGCCCTGAAATGTCAGCTACAGCAGGCTGTGGAGCTGAAAGAAGAATGGAAGAAAGAGCAAGAGCAGCTGAGAAGGCTTGGAGCGGCGAA
GCCGAGGGTGATGTCGAACTCTTGTCTGAGGATGGAGTGCTTGAGCACACCACCAACGATCTTGAAACTTTGGGGGTAACCTGGGAGTTTAGCTTTGGCT
TCAAAAGCGACATCTTGGGCTTCTATATTTCTGGGGTTCCTCTTTTGCTTTGATGATGAAGAGGGAGATTTGAAAGGAGAGAGAGGAGGAGGGAGGGAGG
GATGGGTTTTAGATTCTGGGAGGGAGAGACTCGTGGTGGGAGGAAGGATAAGATGCAGAGAGTAAGAAGGCTGAGTTGGATGGTTGCGATTGGTT