CANTATAdb - search

Detailed information on CNT3032189

BLAST search results

BLAST vs Swiss-Prot:
sp|P69315|UBIQP_LINUS, E-value = 5e-137

BLAST vs NONCODE:
NONTPRT002153, E-value = 4e-69

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30259345	Theobroma cacao	Brassica rapa	78.28	52.56	83.44	483	forward

Expression of CNT3032189

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MVSELSTSRVIVLPVRVLTKICIPPRRRRTSCFPAKISLCWSGGIPSLSWILAFTLSIVSELSTS

>peptide 2 (40 aa)
MVSELSTSRVMVLPVRVLTKICIPPRRRRTRWRVDSFWML*

>peptide 3 (91 aa)
PCQSLNENLHPTTEPQNQMKCRLFLNVIISQSSTVLELLPSKDKPLLVWRDSFLVLDLGLHVVDGVGAFNFQGYGFTRQGLDKDLHPTTET*

Sequence

>CNT3032189
TTCCCTGTCAGAGTCTTAACGAAAATCTGCATCCCACCACGGAGCCTCAAAACCAAATGAAGTGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGTTC
GACCGTCCTCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTC
GGAGCTTTCAACTTCCAGGGTTATGGTTTTACCCGTCAGGGTCTTGACAAAGATTTGCATCCCACCACGGAGACGTAGGACAAGGTGGAGGGTTGACTCC
TTTTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCCTCGAGCTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGA
TCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCGACTTCCAGGGTTATCGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCATCCCACCACGTAG
ACGGAGGACGAGCTGCTTCCCAGCAAAGATAAGCCTTTGTTGGTCCGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCG
GAACTCTCGACTTCGAG