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Detailed information on CNT30320390


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S9K7|H2AXB_ARATH, E-value = 3e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672119Asparagus officinalisSetaria viridis4.3126.0987.8866forward
CNT30520471Asparagus officinalisSetaria italica6.2621.5790.6296forward
CNT30680268Asparagus officinalisTriticum urartu8.4129.7285.27129forward
CNT30351418Asparagus officinalisEragrostis tef8.3522.5785.94128forward
CNT30118009Asparagus officinalisOryza nivara5.4128.3384.3483forward

Expression of CNT30320390

Peptides detected in this lncRNA

>peptide 1 (42 aa)
FQNTLKVLKCEALNSQTLNSNYMIMNYKNTRLKTNQYHNTLN*

>peptide 2 (67 aa)
MDRVKNQSPQQRGTRAPPRGTPERRRRPSRRTSPPSRTWRSSPRGTGARPSTTSTPPSMSSASLSRP*

Sequence

>CNT30320390
TTCCAAAATACATTGAAGGTACTAAAATGTGAAGCGTTGAATAGCCAAACATTAAACAGTAATTACATGATAATGAATTATAAGAATACTAGACTAAAAA
CTAACCAATATCATAATACTTTGAATTAGAAACATATTTCCAGTGAGTTTGAGCTCCAGCCTCCCATATCACACTAAATAAAACATTAAATCAAGATCAT
TGCCCCAAAGATTAAAAGACCACATGCCAAGCATTTTTCTGTAGGTTAAATATTTACTTATGCCAAACCCAAATAATTAACAACCAAAATCAAACAGTAA
ATCTCCCATTCATTCCAGCGCCAAGCCAACATTACACCAATTCAAACTAAGACTCTACTGTTGTATGTAAAATCTCATCCAAAATAAAACCTTTATAACA
CCCATAAAAAAAATAAAGAGGCAGAAAAAGCTCTAGAACTCCTGAGAAGCAGACCCGACATCGCCCTTCCCCTTCCCTTGCTTCTTCGGCAAGAGCGTCT
GATGGATGTTGGGTAGAACACCGCTGACCGCGCCCAAGAAGCATTGCCTCAGCTCCTCGTCGTTCCTCACCGCGAGCTGAACGTGCTCGGCACGATCCTG
TCTTCTTGTTGCTTCCCTCGCGCGCTTCCCAAGCCAACTCCAGAACCTACACGACGTCAGCAGTGAATCAAAAAAGATCGATAAGGGGGTGTTTGTTTCA
CCTATAATTTTAGGATATGGATTTCACCATAGAATTTAAAATCAATAAGTAATTTATTATGAGTTGGGATTTCTAAAACTTTGTTTGTTTCAACAATATT
TTGAAATTTGGAATAATATAATTTGTAACATTTTTGTTTGTTTCAAACTTTTTGAGATTTAAAAACCTCTTTATGCCACCTTTGAAATCCAACTCACATG
CCACCTAAAAAAGAGGATTTCACAAATCCTTAAATGTAATACTTTTTTATTATTTAGGAATTTGATATTCTAAAATTTGTTTTGAAACAAACATAAAAAA
TTCTGAAATCCAAAAAAAACCACTTTTTGATCCTAGAATTTAAAATCTCACCTAAATGCCAATTTTTTTTTGAAACAAACACCCCAAAAAACAATGCGAC
GCCAGCCATTAAAAAAGATACCATTTTTCACAGATGTCACTGCAGTAAACAGATATATGTGATCCAAATTATCTACTCCAATCACCAAACCGCGTCAAAA
TCAAAATAAACGCCCAAAAAACCCTAACCCTAAACCCTAACTCGAAATGGATCGGGTCAAGAACCAATCACCTCAGCAGCGAGGTACTCGAGCACCGCCG
AGAGGTACACCGGAGCGCCGGCGCCGACCCTCTCGGCGTACTTCCCCGCCTTCAAGAACCTGGCGATCCTCCCCACGGGGAACTGGAGCCCGGCCTTCGA
CGACCTCGACACCGCCTTCGATGTCTTCGGCTTCCCTCTCCCGCCCTTAGTCGACGCTGCGGAGCTCATCTCTGGTAAAAAAAAAAATTTTTTTTTTTAA
AATTGCGATGAAATTGACGGTGCTCGAGTTATT