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Detailed information on CNT30319727


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553919Asparagus officinalisOryza glaberrima14.8521.4881.25128reverse complement
CNT30101726Asparagus officinalisOryza rufipogon14.8522.4281.25128reverse complement
CNT30576293Asparagus officinalisOryza barthii14.8524.5281.25128reverse complement
CNT30496981Asparagus officinalisDigitaria exilis16.0122.6680.43138forward
CNT30332970Asparagus officinalisCynara cardunculus15.0824.4485.38130forward

Expression of CNT30319727

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSTFTGFRNLAPKTKNLVVAGGLSGFVLGVYYYTMRAVGGTDELQVAIDKFEEMNANNKTETGPATSTRS*

>peptide 2 (42 aa)
ATTFLRPKNSFRSSPFVNKSSLIYIRASLEEIRARFNLDAVL*

>peptide 3 (46 aa)
MFSFSRDFSIVSDCAYRPKRLWWQGDVVLELSVICNKLVSGFFWQL*

Sequence

>CNT30319727
GGCCACAACTTTCCTCAGGCCAAAAAATAGCTTCCGAAGTAGTCCTTTTGTAAACAAATCCTCCTTGATTTACATAAGAGCTAGTTTAGAAGAAATCCGG
GCTAGATTTAATCTTGATGCAGTTTTGTGAGGATTGCCAAACACAAGCGCCTCACTTACCCAGTTTAATTGAAGTGCACAGCCGAAAGCAAATTTAAAAA
CGGGTCGGGTCTTACAGGATCCGAACCACATCCAACATAACCCCCGGCTGGTTCTAAACGGCTTATGTGGTCTTCGGAGCCGCCGACCTCTCTCTAAAAT
CGATCCTCGCCTTCCCCCTCTCTCAGGAATTAGTTGTATAACTGCAAGATGTCTACATTCACCGGGTTTCGCAACCTTGCTCCAAAGACCAAGAATCTGG
TGGTCGCTGGTGGCCTATCGGGTTTTGTCCTTGGCGTGTACTATTATACCATGAGAGCCGTTGGCGGTACCGACGAGCTTCAAGTTGCCATTGATAAGTT
TGAAGAGATGAACGCCAACAATAAAACAGAGACGGGACCTGCAACCTCAACTAGATCTTAATGGCAGTTTTTACCTTTTGTTCGCCAGTGGTTTTAAATT
AGACTGGAAAAATGTGGAACTATCCTCTGGGTTATTTGTGCGATGTTTTCCTTTTCAAGAGATTTTAGTATAGTATCAGATTGTGCATATCGACCCAAGC
GTCTCTGGTGGCAAGGTGATGTGGTTTTAGAATTGAGTGTTATCTGTAATAAACTTGTATCTGGATTTTTCTGGCAGTTGTGAAATCTTTTCATGTTTCT
CTTCTTGTATGTAATACCATAAAGATTACTATCTTCAGTTGTCATAAACATCGTGTGCCGCA