Detailed information on CNT30319422


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672757Asparagus officinalisSetaria viridis9.1634.5686.6775reverse complement
CNT30378671Asparagus officinalisArabidopsis thaliana8.7925.5386.1172reverse complement
CNT30402011Asparagus officinalisBeta vulgaris16.3622.8391.79134reverse complement
CNT30285397Asparagus officinalisTriticum aestivum52.2632.1696.26428reverse complement
CNT30538116Asparagus officinalisBrassica napus39.9326.9899.08327forward
CNT30555120Asparagus officinalisOryza glaberrima10.0134.7595.1282reverse complement
CNT30360998Asparagus officinalisLactuca sativa14.4140.6983.9118forward

Expression of CNT30319422

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGAGHARSRYLNRKEGDAEGGASDWSEVVTR*

>peptide 2 (39 aa)
MKPESLVIAGQPYGGEFVPGPCTHRPSHYGSWPCPKSLP*

>peptide 3 (30 aa)
MTSSHHAPYALGDTRATMGGTKGRDPARVS*

>peptide 4 (49 aa)
RTLPGLDMPRILLKERGAFGNADTGGAWLSSARAVRCWVKSRNERNPRV*

Sequence

>CNT30319422
GAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCG
TGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACCATTGAGTGTGGAACCCTGAACAGACTGCCGGTGATAAGCC
GGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGACAAAGGGTCGCGATCCCGCGAGGGT
GAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGT
GAATTCGTTCCCGGGCCTTGTACACACCGCCCGTCACACTATGGGAGCTGGCCATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGGGGATGCCGAAGGC
GGGGCTAGTGACTGGAGTGAAGTCGTAACAAGGTAGCCGTACTGGAAGGTGCAGCTGGATCACCTCCTTTTTAGGGAGAGCTAATGCTTATGCTTGTTGG
GTATTTTGGTTTGACACTGCTTCACACCCAAAAAGAAGCGAGCTACGTCTGAGCTAAGCTTGGATATTGAAGTCTTCTTTCGTTTCTCGACGGTGAAGTA
AGACCAAGCTCATGAGCTTATTATCCTAGGTCGGAACAAGTTGATAGGATCGCACTTTTTACGTCCCCATGTCGCCACACGGGAGGGACATGGGGCGCAA
AAAGGAAAGAGAGGGATGG