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Detailed information on CNT30319109


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 8e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30502101Asparagus officinalisNicotiana attenuata9.3223.1987.16109reverse complement

Expression of CNT30319109

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MFSSLTIFMKTSEDPCLSLFGGFICCEDLELNRLKRDILTF*

>peptide 2 (83 aa)
SNPSRSRVFSPSSLGLNESRRLSSSARTSRTSVRRPRWCRNPPELIFTGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKMT*

>peptide 3 (58 aa)
MYTAGNGLHIVGAHGDSPCLKVKPASKVSITSFYPYQCSSICSCSSHTWRISSAVCVG*

>peptide 4 (46 aa)
MLLKGRRVIRGRLLARSASRFKVQQCTLRGMGCISLEHMVIALALK*

Sequence

>CNT30319109
CTCGAACCCTTCTCGCTCTAGGGTTTTCTCGCCGTCGTCTCTTGGACTAAACGAAAGCCGCCGTCTCTCATCCTCTGCTCGAACTTCCCGCACATCTGTA
CGCCGACCTCGATGGTGTCGAAATCCTCCAGAGCTCATTTTCACGGGAAAGCAGCTCGAGGATGGCCGGACCCTGGCTGATTACAACATACAGAAGGAGT
CGACTCTCCACCTCGTCCTCCGTCTCCGTGGTGGCGCCAAGAAGATGACTTAAAAATTCACTCTCCAATGGTTAAACAAGAGGGCGCTATCTCCGGCTTC
TTCTTCATTCAAAAATCAGAATTCGATCGAGGCTTCACCCAGGGTTAGGGTTTGAGAGTTCAGAGCCAAAGGTCAGGAACCACTGAAACCTTCCTCCTGA
GATAGAAGCTAAAAATGGTGGTGCCTCCTTCATTGCAGAGACCATGACTAAAGAGAAATAAAAGTTAGTCGTAGCTCGAGAGGAATAAAAGCTTGAGGTC
AAGTTGGAACGTGACTTCATGTTGGACAAGTTGGACGAGCTGCTCACACAACAAAGCCGGCTCTAGCCTGAAATTTTGCTTGAGAGAATGGATGACATTG
CTGCAACATTGCAGTAAAACAAAAGTTGAAGAAGAAGAAGGTAGTCCGAAATAAGAAGATGCTCTTAAAGGGAAGAAGGGTCATAAGAGGAAGGTTGCTA
GCTAGGAGTGCTTCAAGGTTCAAAGTTCAACAATGTACACTGCGGGGAATGGGTTGCATATCGTTGGAGCACATGGTGATAGCCCTTGCCTTAAAGTGAA
GCCAGCGTCCAAGGTTTCCATCACCAGTTTCTATCCTTATCAGTGCAGCAGTATTTGCTCTTGCTCATCTCACACCTGGAGAATTTCCTCAGCTGTTTGC
GTTGGGTAATGTTTTCAAGCTTAACAATATTCATGAAAACATCTGAAGATCCATGCTTGTCGCTCTTTGGGGGATTTATTTGTTGTGAAGATTTAGAACT
TAATCGTCTCAAAAGAGACATTTTGACCTTTTGATTAAGTAGTAGCTCTTTGTTTTAATCATGGAGGATTTGTGATATGTGCTTAATTTGGTAAGTTTTT
GTGTAAAACTTGTGAAGAATTATCTCAATCCTATTGCTATAATATTGTTATTCGTTGTAATGAATTGTTC