Detailed information on CNT30318742


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Asparagus officinalisOryza sativa16.4532.1890.2102forward
CNT30230907Asparagus officinalisAnanas comosus16.4534.3486.27102forward
CNT30149049Asparagus officinalisBrachypodium distachyon16.4523.5688.24102forward
CNT30115704Asparagus officinalisOryza nivara13.7125.1590.5985forward

Expression of CNT30318742

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNVFSRLERASATSIIAIKHLKSTKQNSSNSRTR*

>peptide 2 (39 aa)
VLVQLQLRDHNLGGVDADVDGGAVDLLPRDPLHVCDHES*

>peptide 3 (96 aa)
SLSSFSFVITTLEGLMPTLTVEPLTFSLVIRSTFVITKAEAGQDGARRCSTAKAKGRMPTRRRGSSRPRRSPPPPLAEPLRSRRSIEKKLSLLSSS*

Sequence

>CNT30318742
GGTCCTTGTCCAGCTTCAGCTTCGTGATCACAACCTTGGAGGGGTTGATGCCGACGTTGACGGTGGAGCCGTTGACCTTCTCCCTCGTGATCCGCTCCAC
GTTTGTGATCACGAAAGCTGAAGCTGGACAAGACGGCGCAAGGCGCTGCTCGACCGCGAAGGCCAAGGGGAGAATGCCGACAAGGCGAAGGGGAAGTTCT
CGGCCGAGGAGGTCGCCGCCGCCGCCGCTGGCGGAGCCGCTTCGCTCCAGGAGATCGATTGAAAAAAAGCTGAGTCTTTTATCTAGTTCTTGAATTTGAG
GGGTTTTGTTCCGTACTTTTTAGGTGTCTAATGGCGATGATACTGGTAGCACTCGCCGATGAATGTTTTTTCAAGACTTGAGAGAGCGAGTGCTACCAGT
ATCATCGCCATTAAACACCTAAAAAGTACGAAACAAAACTCCTCAAATTCAAGAACTAGATAAAAGACTCAGCTTTTTTTCAATCGATCTCCTGGAGCGA
AGCGGCTCCGCCAGCAGAGGTCCCACGGACGACGAGGACCTCGTCGTCCTTGCGGATCGGCATCGAGCGGACGTTGTACTTGGACCGGAGGTCGGCCGAG
AGGGGGGCGCTCATCAGGAC