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Detailed information on CNT30318541


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 8e-98

BLAST vs NONCODE:
NONBNAT004786, E-value = 5e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500451Corylus avellanaCoffea canephora48.1921.1888.5226forward
CNT30277485Corylus avellanaChenopodium quinoa25.5914.0785.83120forward
CNT3021362Corylus avellanaCitrullus lanatus88.0663.4481.11413forward
CNT30727603Corylus avellanaCorchorus capsularis91.4786.8482.05429forward
CNT30504810Corylus avellanaNicotiana attenuata47.5534.2587.44223forward
CNT30710642Corylus avellanaGlycine max34.5417.3381.48162forward
CNT30637312Corylus avellanaCapsicum annuum46.9151.1684.55220forward
CNT3098150Corylus avellanaSolanum tuberosum34.3332.8683.23161forward
CNT30222279Corylus avellanaHordeum vulgare54.5884.7783.59256forward
CNT30590847Corylus avellanaMusa acuminata83.3785.5680.82391forward
CNT30510767Corylus avellanaSolanum lycopersicum46.726.0483.11219forward
CNT30143812Corylus avellanaMedicago truncatula48.6118.4383.33228forward
CNT30457014Corylus avellanaSaccharum spontaneum86.7853.2779.85407forward
CNT30358465Corylus avellanaLactuca sativa46.72185.39219forward
CNT30424172Corylus avellanaPapaver somniferum47.9732.2382.22225forward
CNT3054595Corylus avellanaAmborella trichopoda38.8187.9282.42182forward
CNT30325711Corylus avellanaAsparagus officinalis65.4696.2480.78307forward
CNT30580107Corylus avellanaEchinochloa crusgalli82.7374.7679.9388forward
CNT30594668Corylus avellanaEragrostis curvula54.5875.9683.98256forward
CNT30174824Corylus avellanaVigna angularis87.6343.2683.94411forward
CNT30336663Corylus avellanaCynara cardunculus48.8349.0486.46229forward
CNT30723923Corylus avellanaLupinus angustifolius42.6497.5685200forward

Expression of CNT30318541

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MSSNLGSPKRCTKFSFLPVKKLSMTITSSPLSRSLSTRWLPTNPAPPVTTILDLRRPIPAGTLPTLLRV

>peptide 2 (95 aa)
MNRGGRASQVVDLIHLQKNRLDDVVSDELEPGVPKAVYQILLPAGEEIVNDDHIVPSIEKLVDEVAADESRPTGDHDPRSPPSNPSWNPPDLAESP

>peptide 3 (38 aa)
LTYWIHVSPISLFLGMLKWVSVNLTRTREQKPRSNSLC*

Sequence

>CNT30318541
TCTCACCTATTGGATTCACGTTTCCCCAATAAGTCTCTTTCTGGGGATGCTCAAGTGGGTCTCCGTAAACCTCACTCGTACTCGTGAGCAAAAACCTCGC
TCCAATTCTCTTTGCTAGACCCAACATATTCAGGGTACCCATCACATTAGATATGATGGTCTTGACAGGATTATACTTGTAATGAACCGGGGAGGCAGGG
CAAGCCAAGTGGTAGATCTGATCCACCTCCAGAAGAATCGGCTCGACGACGTCGTGTCGGATGAGCTCGAACCTGGGGTCCCCAAAGCGGTGTACCAAAT
TCTCCTTCCTGCCGGTGAAGAAATTGTCAATGACGATCACATCGTCCCCTCTATCGAGAAGCTTGTCGACGAGGTGGCTGCCGACGAATCCCGCCCCACC
GGTGACCACGATCCTCGATCTCCGCCGTCCAATCCCAGCTGGAACCCTCCCGACCTTGCTGAGAGTCCT