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Detailed information on CNT30318271


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-46

BLAST vs NONCODE:
NONBNAT006984, E-value = 2e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546681Corylus avellanaIpomoea triloba31.3566.1780.71311forward
CNT30375418Corylus avellanaArabidopsis thaliana8.0633.983.7580forward
CNT30616210Corylus avellanaSesamum indicum30.0423.8283.22298forward
CNT30504865Corylus avellanaNicotiana attenuata17.4433.7984.97173forward
CNT30178072Corylus avellanaSecale cereale26.3148.1581.23261forward
CNT30221015Corylus avellanaHordeum vulgare20.2638.1483.08201forward
CNT3086297Corylus avellanaVigna radiata28.0223.980.22278forward
CNT30172567Corylus avellanaTrifolium pratense31.0545.1682.47308forward
CNT30261175Corylus avellanaBrassica rapa25.353.1882.87251forward
CNT30679384Corylus avellanaTriticum urartu26.3143.0780.84261forward
CNT30357929Corylus avellanaLactuca sativa25.9157.3782.1257forward
CNT30644824Corylus avellanaCannabis sativa25.9126.6682.49257forward
CNT3052246Corylus avellanaAmborella trichopoda27.1222.3279.55269forward
CNT30331117Corylus avellanaDioscorea rotundata30.7532.2178.03305forward
CNT3050826Corylus avellanaCucumis sativus12.837.2483.46127forward

Expression of CNT30318271

Peptides detected in this lncRNA

>peptide 1 (38 aa)
VFSIKLKDLTFHLLAFSNNNHFHQISKKGKEIGKSIDK*

>peptide 2 (35 aa)
MPWMLSLRTFLCLFAPPLPNPLPPFPRPDILNREI*

>peptide 3 (86 aa)
MKMQCRIPEGRWIYYIADKVCVSCIRWTLVTVGFMSYRRLKWRSASFALELFKPSIVFQSTADCCQRFFLRIVFSLASLMWSLERL*

>peptide 4 (33 aa)
MAVTVFLRACSVYVTASRITFSRKIFRTPRVSS*

Sequence

>CNT30318271
GTCTTCTCGATTAAGCTCAAAGATCTTACCTTTCATTTGCTAGCTTTTTCTAACAACAATCATTTCCACCAAATTTCAAAAAAAGGAAAAGAAATAGGCA
AATCGATTGACAAATAGATTAGATTGATCCATTTGGGATCCGATTGGATTTGCATACGCATTTCATTGATTAACATGAACGAAACAACAACAATATCACA
CGGCTAATTCAATTAATAGTTTCTTGAACATATCACTAAGATCCATTGCAAACAGAAATGCAATTACAAACCATATAGAGTAACCTAGAACAGACCCTAC
GACCCACTACCATAGGAACAATCAAGCCGATTTACAACTCTCAGAAAACCTAAATAAAACCATCTCAGCCGCCGAAACCATACAAAGTCCTTCCCTGCCT
CTTGAGGGCATAAACGACATCCATGGCGGTGACCGTCTTCCTCCGGGCGTGCTCAGTGTACGTGACGGCATCACGGATAACGTTCTCGAGAAAAATCTTC
AGGACGCCACGCGTCTCCTCGTAGATAAGGCCGCTAATCCTCTTGACACCGCCTCTTCTGGCCAGACGCCTAATCGCAGGCTTCGTAATGCCCTGGATGT
TATCCCTGAGAACCTTCCTGTGCCTCTTCGCTCCACCTTTGCCCAACCCCTTGCCTCCCTTTCCACGACCCGACATTTTAAACAGAGAGATCTAGGGTTT
TGAATTTGGGGATTTTGTGTCTCCTGATGAAAATGCAATGTCGGATTCCTGAGGGCCGGTGGATTTATTATATAGCCGATAAGGTCTGTGTTTCCTGTAT
AAGATGGACGCTTGTAACCGTTGGATTTATGAGTTATCGACGGTTGAAATGGCGATCCGCGTCATTTGCCTTAGAGTTGTTTAAACCGTCGATAGTGTTT
CAATCGACGGCTGATTGTTGTCAGAGGTTCTTTTTGCGGATTGTGTTTTCTCTCGCATCGCTGATGTGGAGCCTGGAGCGTCTTTAATGAGT