Detailed information on CNT30317874


BLAST search results

BLAST vs Swiss-Prot:
sp|P12365|CATA2_MAIZE, E-value = 3e-50

BLAST vs NONCODE:
NONCQUT006985, E-value = 4e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516671Corylus avellanaJuglans regia21.7211.3292.4553forward
CNT30373064Corylus avellanaArabidopsis thaliana47.5420.3281.9116forward
CNT30405515Corylus avellanaBeta vulgaris36.486.5584.2789forward
CNT30526368Corylus avellanaPhaseolus vulgaris40.576.2289.999forward
CNT30708847Corylus avellanaGlycine max73.3618.6389.39179forward
CNT30398713Corylus avellanaTriticum turgidum90.9881.6286.49222forward
CNT30567579Corylus avellanaActinidia chinensis63.9345.4884.62156forward
CNT3085325Corylus avellanaVigna radiata76.6426.4588.24187forward
CNT30511681Corylus avellanaSolanum lycopersicum86.0763.2579.52210forward
CNT30668910Corylus avellanaTriticum dicoccoides91.879.7286.61224forward
CNT30611006Corylus avellanaArabis alpina43.8535.282.24107forward
CNT308572Corylus avellanaZea mays86.0772.4187.14210forward
CNT30714890Corylus avellanaMalus domestica golden10086.8390.98244forward
CNT30624536Corylus avellanaDaucus carota79.113.7488.08193forward
CNT30368346Corylus avellanaSorghum bicolor89.7581.1185.39219forward
CNT30359648Corylus avellanaLactuca sativa81.1550.7783.33198forward
CNT30704829Corylus avellanaPrunus avium38.9315.388.4295forward
CNT3051600Corylus avellanaAmborella trichopoda27.8717.6686.7668forward
CNT30119031Corylus avellanaCitrus clementina92.2129.6489.33225forward
CNT30576776Corylus avellanaOryza barthii34.4323.7385.7184forward

Expression of CNT30317874

Peptides detected in this lncRNA

>peptide 1 (80 aa)
LSGVKLHCKTTRIPQGFRATTLMDNSGETDNHRCLSPRGSQEISTCKVSNIMGDLKEPLCTRSPCMDDTFWDPLPFKVGKF

Sequence

>CNT30317874
CTCTCTGGTGTAAAACTTCACTGCAAAACCACGAGGATCCCTCAAGGTTTCAGGGCTACCACGCTCATGGATAACAGTGGAGAAACGGACAATCACAGGT
GTCTGAGCCCCAGGGGCTCGCAGGAAATCAGCACATGTAAGGTGAGTAACATCATGGGTGACCTCAAAGAACCCCTTTGCACTCGCTCCCCTTGCATGGA
CGACACGTTCTGGGATCCGCTCCCTTTCAAAGTTGGCAAGTTTC