CANTATAdb - search

Detailed information on CNT30317753

BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-51

BLAST vs NONCODE:
NONBNAT006984, E-value = 4e-54

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696576	Corylus avellana	Oryza sativa	30.03	46.34	84.69	209	forward
CNT30671259	Corylus avellana	Setaria viridis	32.47	55.26	82.3	226	forward
CNT30523218	Corylus avellana	Setaria italica	40.8	52.01	82.04	284	forward
CNT30703567	Corylus avellana	Quercus lobata	43.1	59.41	82.67	300	forward
CNT30617135	Corylus avellana	Sesamum indicum	41.24	28.61	83.97	287	forward
CNT3069058	Corylus avellana	Quercus suber	42.53	33.83	82.09	296	forward
CNT30197034	Corylus avellana	Pisum sativum	42.1	36.22	82.25	293	forward
CNT30712284	Corylus avellana	Glycine max	41.52	61.49	83.39	289	forward
CNT3042757	Corylus avellana	Prunus dulcis	42.67	49.01	86.2	297	forward
CNT3092650	Corylus avellana	Solanum tuberosum	27.87	50.52	80.93	194	forward
CNT30305698	Corylus avellana	Triticum aestivum	40.8	52.11	81.34	284	forward
CNT30387206	Corylus avellana	Triticum turgidum	27.87	34.77	84.02	194	forward
CNT30563984	Corylus avellana	Actinidia chinensis	24.43	81.73	84.71	170	forward
CNT30553196	Corylus avellana	Oryza glaberrima	30.03	37.46	83.73	209	forward
CNT30441099	Corylus avellana	Aegilops tauschii	40.8	55.04	81.34	284	forward
CNT30244338	Corylus avellana	Avena sativa	40.8	51.17	82.39	284	forward
CNT30667347	Corylus avellana	Triticum dicoccoides	30.03	46.04	83.25	209	forward
CNT3059678	Corylus avellana	Arabidopsis lyrata	23.28	33.68	82.72	162	forward
CNT3082467	Corylus avellana	Brassica juncea	45.26	43.93	83.49	315	forward
CNT30611328	Corylus avellana	Arabis alpina	23.28	35.53	80.86	162	forward
CNT30444399	Corylus avellana	Saccharum spontaneum	40.95	47.82	82.81	285	forward
CNT30139599	Corylus avellana	Lolium perenne	40.95	59.62	81.75	285	forward
CNT304209	Corylus avellana	Zea mays	26.15	31.27	84.07	182	forward
CNT30229571	Corylus avellana	Ananas comosus	20.11	33.98	84.29	140	forward
CNT30211420	Corylus avellana	Helianthus annuus	45.26	63.51	81.59	315	forward
CNT30687044	Corylus avellana	Triticum urartu	42.96	29.34	80.6	299	forward
CNT30720165	Corylus avellana	Triticum spelta	17.53	26.01	85.25	122	forward
CNT30348363	Corylus avellana	Eragrostis tef	40.8	50.99	82.04	284	forward
CNT30619612	Corylus avellana	Cajanus cajan	26.44	43.91	83.15	184	forward
CNT30596905	Corylus avellana	Oryza meridionalis	27.87	31.91	83.51	194	forward
CNT30370989	Corylus avellana	Oryza glumipatula	38.65	43.04	81.78	269	forward
CNT3024855	Corylus avellana	Populus trichocarpa	44.68	52.98	79.42	311	forward
CNT30325970	Corylus avellana	Asparagus officinalis	44.68	45.07	82.32	311	forward
CNT30148252	Corylus avellana	Brachypodium distachyon	24.57	42.22	85.38	171	forward
CNT30101647	Corylus avellana	Oryza rufipogon	38.65	28.86	82.16	269	forward
CNT30577582	Corylus avellana	Oryza barthii	27.87	30.5	83.51	194	forward
CNT30581397	Corylus avellana	Echinochloa crusgalli	27.87	33.05	83.51	194	forward
CNT30496126	Corylus avellana	Digitaria exilis	41.67	42.65	82.76	290	forward
CNT30117618	Corylus avellana	Oryza nivara	30.03	46.44	84.21	209	forward

Expression of CNT30317753

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MLSRRTFLCRLAPPLPKPLPPFPRPDIFESFMKFEILGLKIFDEGFLVWIGVFIEGVLGKGFEKKGFEF

>peptide 2 (47 aa)
FWCSQFYLHNFVQIEIKNMDSMIIQLHLGIFSDYTKKKKLYSDSNQI*

>peptide 3 (33 aa)
MAVTVFLLACSVYVTASRITFSKKIFSTPLVSS*

Sequence

>CNT30317753
TGTTTTGGTGCAGTCAATTCTACCTTCACAATTTTGTTCAGATTGAAATAAAAAATATGGACTCAATGATAATTCAACTCCATTTGGGCATTTTCTCTGA
TTATACTAAAAAGAAAAAGCTATATTCAGATTCAAATCAGATATGATTACAGGAAATCTAACCCATCTATTTCAATCTGGAATTTTGTTAACACAAAAGA
AAAGCGTTTGAGACCAAATGAAAATCGCAAATACATTTCCAGTACGCCCAGATCTTTAACCTCCAAACCCGTAGAGAGTCCTTCCCTGCCGCTTCAGCGC
ATAGACAACATCCATGGCTGTCACGGTCTTCCTCCTAGCGTGTTCAGTGTACGTCACTGCGTCGCGAATAACGTTCTCCAAGAAGATCTTCAGCACCCCT
CTTGTCTCCTCGTAGATTAGCCCGCTGATTCTCTTGACCCCTCCTCTCCTCGCCAGTCTCCGGATCGCTGGCTTCGTGATACCCTGGATGTTGTCCCGGA
GAACCTTCCTGTGCCGCTTGGCTCCGCCCTTGCCCAAACCCTTGCCTCCCTTTCCACGGCCAGACATTTTCGAAAGCTTTATGAAGTTTGAGATTTTAGG
GTTGAAGATTTTTGATGAGGGATTTCTGGTGTGGATTGGGGTTTTTATAGAAGGGGTTTTGGGGAAGGGATTTGAGAAGAAAGGTTTTGAATTTGG