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Detailed information on CNT30317088


BLAST search results

BLAST vs Swiss-Prot:
sp|Q93ZC5|AOC4_ARATH, E-value = 1e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692141Corylus avellanaOryza sativa25.0327.2782.51183forward
CNT30703802Corylus avellanaQuercus lobata38.7122.7586.93283forward
CNT30616476Corylus avellanaSesamum indicum25.7237.986.17188forward
CNT30121765Corylus avellanaPhyscomitrium patens13.5420.582.8399forward
CNT30589607Corylus avellanaMusa acuminata25.0346.6886.34183forward
CNT30552977Corylus avellanaOryza glaberrima25.0327.3182.51183forward
CNT30611156Corylus avellanaArabis alpina9.5823.4985.7170forward
CNT30132965Corylus avellanaLolium perenne25.0339.8780.87183forward
CNT301476Corylus avellanaZea mays10.5323.4890.9177forward
CNT30231426Corylus avellanaAnanas comosus25.0323.3185.25183forward
CNT30625785Corylus avellanaDaucus carota29.2732.7780.84214forward
CNT30345256Corylus avellanaEragrostis tef25.0335.682.51183forward
CNT30595924Corylus avellanaOryza meridionalis25.0337.8183.06183forward
CNT30153443Corylus avellanaPrunus persica15.8750.8887.93116forward
CNT30573153Corylus avellanaVitis vinifera23.1226.7885.21169forward
CNT30101081Corylus avellanaOryza rufipogon25.0315.0282.51183forward
CNT30116289Corylus avellanaOryza nivara25.0323.482.51183forward
CNT30112524Corylus avellanaFicus carica44.8719.2385.98328forward

Expression of CNT30317088

Peptides detected in this lncRNA

>peptide 1 (40 aa)
SKHIFAVSQYILHATITPSPHHMLVWSFFFQGRHQITKGK*

>peptide 2 (61 aa)
VEAHICCLPIHITCHHHSQSPPHARLVVFLSRKASNNKRKMTTYLLGVTITIFIIVHRTWL*

>peptide 3 (35 aa)
RSTYLLSPNTYYMPPSLPVPTTCSFGRFSFKEGIK*

Sequence

>CNT30317088
GTCGAAGCACATATTTGCTGTCTCCCAATACATATTACATGCCACCATCACTCCCAGTCCCCACCACATGCTCGTTTGGTCGTTTTTCTTTCAAGGAAGG
CATCAAATAACAAAAGGAAAATGACAACATATTTGTTGGGAGTCACCATCACCATCTTCATCATCGTCCACCGAACATGGCTCTAAAGTTTATTAAGAAT
GCTTTTCTAAGTCCCACATTCCTAGCAAAAATGACTTAAAAAAAAAAAAAATTGTTCTGCTTTTCCCCATCGTGCACCCAACCATCCACTTCCAAAATTA
GTTTGTGAAATTGGCTAAAGTGGCGTGGGGCTCACAAGCCTTTGCAGCAGGGCTCGGCTCCACCGCCGGGCTCGGCTCAACTGGCTTCCCGAGAAGCTCC
TCCGGCAAGTCGGCCTTGATGCCTTTCAAGTAGAAAGTGTAGAAGAGTTTGAAGGGGAATACGATCTGCTGCAGCTTCACCTGCCCGTACGCCCCCTCAA
AGATCCCAGAGCCACCGGTCACCGCCAAGTACGTGTCCTCGTAGGTCAAGTACGCTCCCTGCACCGATATGTGACCGTAGTCCCCGAAGTAGAAGCTGTA
GATCGCCTCGTACCTGTCACCTTTCTTCTCCGCTTTGTTTTCGATCAAAATGCATATTCCTGCTGTGATCCCCGCCCGTTTTTGCAGGTCCCCGGTATAC
AACTATAAGAAAATATAAGGAGCGTGTAAAG