CANTATAdb - search

Detailed information on CNT30316941

BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30378910	Corylus avellana	Manihot esculenta	39.93	20.36	83.9	236	forward
CNT30723501	Corylus avellana	Lupinus angustifolius	39.93	21.85	82.2	236	forward

Expression of CNT30316941

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MENIASRPFFSSFTFSSANASGSSASPSGSNAPPG*

>peptide 2 (35 aa)
MLPGHQPVQAGQMHHPGKLGRVLRRVVLRQPCTLR*

>peptide 3 (50 aa)
MENIASRPFFSSFTFSSANASGSSASPSGSNAPPGWSERFSMGPFPVTIA*

Sequence

>CNT30316941
GCAGTTTTCACTAGTAATTAATAATATTACATCAGTACAGATGGAATAGCAAGGACAACAACGAAGGCAAGAAGATTGAGTAATGTCACAGCTGAAGCCA
CAAATTTAATATTCTGTTTTAGATTTCTTCATTTTCCGGGCACAAAGTTGGTGGCGTAAGCCCATGCATTGTTGGCCACCGGGTCAGCAAGGTGGTCAGA
GAGGTTCTCAATGGGGCCCTTTCCGGTGACAATCGCCTGAACGAAGAAACCGAACATGGAGAACATTGCCAGCCGCCCGTTCTTCAGTTCCTTCACCTTC
AGCTCTGCAAATGCTTCCGGGTCATCAGCCAGTCCAAGCGGGTCAAATGCACCACCCGGGTGGTCAGAGAGGTTCTCAATGGGGCCCTTTCCGGTGACAA
TCGCCTGAACGAAGAAACCGAACATGGAGAACATTGCCAGCCGCCCGTTCTTCAGTTCCTTCACCTTCAGCTCTGCAAATGCTTCCGGGTCATCAGCCAG
TCCAAGCGGGTCAAATGCACCACCCGGGTAAATTGGGTCGAGTCCTTCGCCGAGTGGTCCTCCGCCAACCCTGTACCCTTCGATGAACCCC