CANTATAdb - search

Detailed information on CNT3031691

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 1e-95

BLAST vs NONCODE:
NONGMAT000502, E-value = 8e-37

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30607179	Theobroma cacao	Gossypium raimondii	66.2	77.02	87.39	476	forward

Expression of CNT3031691

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSLCWSGGIPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICIF*

>peptide 2 (89 aa)
DKKRSANFYSILRLTSYKCDKTQISNIKEKEKKALPYYDSILNLKQRQNLSFRTITAHHGDEGQGGESTPFGYYNQPKYGRPPAVSRRR*

>peptide 3 (61 aa)
MSRCWSGGMPSLSWILALTLSIVSELSTSRVMVLPVKVLTKICIPPRRRRTRWRVDSFWML*

Sequence

>CNT3031691
GATAAGAAAAGATCAGCAAACTTTTATTCCATACTTAGATTAACATCTTACAAATGCGATAAGACCCAGATATCAAACATTAAAGAAAAAGAAAAAAAGG
CACTTCCTTATTATGACAGTATCTTAAATTTAAAACAACGACAAAACCTTTCCTTTAGAACAATCACTGCCCACCACGGAGACGAAGGACAAGGTGGAGA
GTCGACTCCTTTTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCTT
TGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGACAAAGATTTGCATACC
GCCACGAAGACGGAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCCGCCAAGGTACGGCCGTCTTCGAGCTGTTTGCCAGCGAAGATGAGC
CTTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTTATGGTCTTGCCGG
TCAGGGTTTTCACGAAGATCTGCATCTTCTAAAAGGCTATGAGAATAATCTGAGGAGATGATTTGAGAAAGATTTTGATTTGCTCTGTTTGGATGCGAGA
TAACACGGGTGGAGAGGGG