Detailed information on CNT30316746


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 4e-89

BLAST vs NONCODE:
NONBNAT001751, E-value = 5e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30505987Corylus avellanaNicotiana attenuata49.3974.1686.89244forward
CNT30509929Corylus avellanaSolanum lycopersicum30.3670.0990150forward
CNT30232362Corylus avellanaAnanas comosus55.8748.3485.51276forward
CNT30147611Corylus avellanaBrachypodium distachyon40.2833.1787.94199forward

Expression of CNT30316746

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGFCQGCNQPSSGRKKLPSQFHHTSPWSI*

>peptide 2 (41 aa)
MLSPSKPEIGTNGILSGLVDLSIMLSPSKPEIGTNGILSGL*

>peptide 3 (55 aa)
PTLSPGKASRRASWCISTDLTSVVSPVGPKVTTIPGLMTPVSTRPTGTVPIPPIL*

Sequence

>CNT30316746
CCAACATTGTCACCTGGCAAAGCCTCCAGAAGAGCCTCGTGGTGCATCTCAACAGACTTAACTTCAGTGGTTAGTCCAGTTGGGCCAAAGGTGACAACCA
TACCAGGCTTGATGACACCGGTCTCAACACGACCAACTGGAACAGTTCCAATACCACCAATCTTGTAAACATCCTGAAGAGGGAGACGGAGAGGCTTGTC
TGAGGGCCTCTTGGGCTCAGAGAGCAGGTCAAGAGCATCAAGGAGGGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCC
TCGAAACCAGAGATAGGAACAAATGGGATTTTGTCAGGGTTGGTTGACCTCTCAATCATGTTGTCACCCTCGAAACCAGAGATAGGAACAAATGGGATTT
TGTCAGGGTTGTAACCAACCTTCTTCAGGTAGGAAGAAACTTCCTTCACAATTTCATCATACCTCGCCTTGGAGTATTTAGGGGTAGTTGCATC