Detailed information on CNT30316727


BLAST search results

BLAST vs Swiss-Prot:
sp|P49249|IN22_MAIZE, E-value = 2e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517065Corylus avellanaJuglans regia17.1973.4592.02213forward
CNT30566887Corylus avellanaActinidia chinensis13.3253.5788.48165forward
CNT30570768Corylus avellanaVitis vinifera16.4641.0589.22204forward
CNT30329110Corylus avellanaAsparagus officinalis15.537.7285.42192forward

Expression of CNT30316727

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MRDLSEKDFVGEGAVEVGGVEEGDAGVDGVVDESDHVFFGLGRAIEGGHAHATQALRRHLQSLRTQLYPPHSYGRHFFLFSFLQAIPEAAEA*

>peptide 2 (50 aa)
MQSMWRRFKLASQAALTYAGSPRISIFLSTKQNPNLVANSTLSLTPPFKA*

>peptide 3 (70 aa)
MQRTNRDFDGKAGVDAVLVIQIDAIHVEALQAGLTGGSHIRWIATDLHLPIHKAKSELGCQFHPLSHPSL*

>peptide 4 (33 aa)
MFYSVFVVCVCVLPRFGSPIQPKYQILRLSRPA*

>peptide 5 (50 aa)
MHIKMNVLFCICSMCMCASKVWIPNSTKVPNPSSITAGLTAQILDDLVEN*

Sequence

>CNT30316727
AGATCATACAGAATAAAAGAATTGCATAATTCATCCATGGGATACTTGTCAAAGATATGGCTCAACGCCCCCAACCAAGTTGATTGAGGGTAGTTTACGG
AAGATGCAAAGAACGAACCGTGACTTCGATGGGAAGGCGGGTGTCGATGCGGTGCTGGTAATACAGATCGATGCAATCCATGTGGAGGCGCTTCAAGCTG
GCCTCACAGGCGGCTCTCACATACGCTGGATCGCCACGGATCTCCATCTTCCTATCCACAAAGCAAAATCCGAACTTGGTTGCCAATTCCACCCTCTCTC
TCACCCCTCCCTTTAAAGCCTGAAGCCCAACAAACGAAATCTAAGAACAAACAAGCAAACAAGAAAAAAGAAAAAGAAAAAGAAAATAAAGATGCGGGAC
CTTTCCGAGAAGGATTTCGTTGGTGAAGGGGCCGTAGAGGTCGGAGGTGTCGAGGAAGGTGACGCCGGAGTGGACGGCGTGGTGGATGAGAGCGATCATG
TCTTCTTCGGGCTTGGGAGGGCCATAGAAGGCGGACATGCCCATGCAACCCAGGCCCTGCGCCGACACCTCCAGTCCCTGAGAACCCAGCTTTATCCTCC
CCACTCTTACGGCCGCCATTTCTTTCTTTTCTCCTTTCTACAAGCAATACCAGAAGCAGCTGAAGCCTGACACCCAGGTTGAGCGATTAAAATGGCTGCT
GCGAAAGGTTTAAGAGTGAGTGAGTGAGTGGTAGGTGACGGACGAAGGATTGAAAAGTAAAATAATCCAACTTTTGCGTACGTGCTTACGTTAGCCAATC
TAAATATAATATTCCAGTTTAGGATTTTTTTTAGATAAGAGGCAAGAGATATTTTTACTGATAGAAGACTTTGTCAATCACATAAATCTAAGCGTTTGAA
GTGGCCTAACGCAAGCGTCCAATAAGTGGGGGACATTGAAGGTTTGAGGGTGATTGAAGGTAGGACAAATGAAGGGAGCTTCCCCAGCAAAAATATTTTA
AAAATAAATAAAACAAATGAATATTTATATATTTATTTACATTAATGTATGCATATTAAAATGAATGTTTTATTCTGTATTTGTAGTATGTGTATGTGTG
CTTCCAAGGTTTGGATCCCCAATTCAACCAAAGTACCAAATCCTTCGTCTATCACGGCCGGCCTAACCGCTCAAATACTCGATGATTTGGTTGAAAACTA
ATGTCATAAACTTATATATATGATAAGAATAAATACAAA