Detailed information on CNT3031669


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38850|MYB5_ARATH, E-value = 5e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380220Theobroma cacaoManihot esculenta57.7314.2283.04224forward
CNT30159432Theobroma cacaoPistacia vera58.5112.7381.06227forward
CNT3081824Theobroma cacaoBrassica juncea38.6626.2281.33150forward
CNT30608078Theobroma cacaoGossypium raimondii56.1932.8883.03218forward
CNT30645688Theobroma cacaoCannabis sativa56.1920.3981.19218forward
CNT3021790Theobroma cacaoPopulus trichocarpa57.7322.0978.57224forward

Expression of CNT3031669

Peptides detected in this lncRNA

>peptide 1 (38 aa)
QDYADSPYYQQPVGFDHIADDIPELGATCFQASGVAEE*

>peptide 2 (28 aa)
MALSLSQLCCNMVFCLSLTCLINLGKWKE

Sequence

>CNT3031669
ATCAGGATTACGCCGATTCACCGTACTATCAACAACCTGTTGGTTTTGATCATATTGCTGATGATATTCCAGAATTAGGAGCTACCTGTTTCCAAGCAAG
CGGTGTAGCCGAAGAATGAGATCTTCTTCATCAGGAGCGATACGACCTCGTTTAACTGATGGTCGGAGATAATTCATCCACCGGAGACGACAACTCTTAC
CACATCTGAGCAAGCCAGCTCGCTTAGGCAACGTCCGCCACCTTCCTTCGCCTTCTCTTTTGATGTAGTTGGCTAAGAGCTCATCTTCTTCCGGCGTCCA
TGGCCCTCTCTTTATCCCAACTTTGCTGCAACATGGTGTTTTGCTTGTCGCTGACGTGCCTGATAAACTTGGGGAAATGGAAAGAGAG