Detailed information on CNT30316651


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT001153, E-value = 2e-18

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639567Corylus avellanaNymphaea colorata31.323.1281.17154forward
CNT30500052Corylus avellanaCoffea canephora26.635083.97131forward
CNT3096605Corylus avellanaSolanum tuberosum27.0315.8985.71133forward
CNT30566880Corylus avellanaActinidia chinensis37.619.9684.32185forward
CNT30146672Corylus avellanaMedicago truncatula30.2862.8783.89149forward
CNT3059952Corylus avellanaArabidopsis lyrata25.4137.285.6125forward
CNT3076889Corylus avellanaBrassica juncea2528.3482.93123forward
CNT30472864Corylus avellanaSaccharum spontaneum33.3327.779.88164forward
CNT30479817Corylus avellanaArabidopsis halleri26.0234.7885.16128forward
CNT30570762Corylus avellanaVitis vinifera41.2648.9284.24203forward
CNT30704154Corylus avellanaPrunus avium42.6826.4285.24210forward

Expression of CNT30316651

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKEIFFEIPNLSDVIVGKIFNTLNPRRKESCS*

>peptide 2 (30 aa)
GVSFTDRAPMFWLKFSILVVPGMGHTSFPW*

>peptide 3 (37 aa)
RGEFHRQSSNVLVEVFNFGGSWNGTHVIPLVMNPGQC*

Sequence

>CNT30316651
CCGGGGTGAGTTTCACAGACAGAGCTCCAATGTTCTGGTTGAAGTTTTCAATTTTGGTGGTTCCTGGAATGGGACACACGTCATTCCCTTGGTGATGAAC
CCAGGCCAGTGCTAGTTGTGATGGAGTGCATCCCTTCCTCGTTGCCATTTCATTAACACGCTCAAATACGATTTTGTTATGCTCCAGATTTTCAGGTTGG
AACCTAGGTAGAGACTGCGAGCCATGAATACATACATCAGCATTGAGACTGGAATCACATATTAATGGACATCTAAGGTACCAATGATAAGCATACCCTT
TAGAATACGTATAAGCACTAAGACTGAAATTATTAAATATATTTCAATGAGGTTGTGTAATTCATGAAGGAAATATTTTTTGAAATTCCAAACCTTTCGG
ACGTCATCGTTGGAAAGATTTTCAACACCCTTAACCCCCGACGAAAAGAATCCTGCTCCTAGAGGACTGTATGCAACAATCCCAATGCCCAA