CANTATAdb - search

Detailed information on CNT30316367

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-123

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-101

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30512897	Corylus avellana	Juglans regia	99.07	54	91.18	533	forward
CNT30500575	Corylus avellana	Coffea canephora	71.19	41.54	85.64	383	forward

Expression of CNT30316367

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSKVMVFPVKVFTKICIPPRRRSTKWRVDSFWML*

>peptide 2 (57 aa)
WSGGMPSLSCIFALTLSIVSELSTSKVMVFPVKVFTKICIPPRNRSTKCRVDSFWML*

>peptide 3 (59 aa)
VRWDALFVLYLRLDIVNSIRTFNLQGYGFSCQSLHKNLHSTTQPKHQVQGRLLLDVVIG*

Sequence

>CNT30316367
TGGTCCGGTGGGATGCCCTCTTTGTCTTGTATCTTCGCCTTGACATTGTCAATAGTATCCGAACTTTCAACCTCCAAGGTTATGGTTTTTCCTGTCAAAG
TCTTCACAAAAATCTGCATTCCACCACGCAACCGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCGGCTAAGGTCCTTCCATCTTCCAA
CTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATACCCTCTTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTATCAGAACTCTCAACC
TCCAAAGTAATGGTTTTTCCGGTCAAGGTCTTCACAAAAATTTGCATTCCACCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGT
AATCCGCAAGAGTCCGACCGTCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGGATCTTGGCCTTGAC
ATTATCGATGGTGTCCGAGCTCTCGACTTCCAAGGTTA