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Detailed information on CNT30316147


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 8e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Corylus avellanaSetaria italica39.7339.4784.46296forward
CNT30530404Corylus avellanaEucalyptus grandis46.7198.0387.07348forward
CNT30703138Corylus avellanaQuercus lobata61.7487.7986.96460forward
CNT30499549Corylus avellanaCoffea canephora56.3885.7182.38420forward
CNT30615836Corylus avellanaSesamum indicum36.5171.0279.78272forward
CNT3021247Corylus avellanaCitrullus lanatus55.9745.2880.1417forward
CNT30729539Corylus avellanaCorchorus capsularis60.1366.6781.25448forward
CNT3068683Corylus avellanaQuercus suber59.0689.4387.5440forward
CNT30524728Corylus avellanaPhaseolus vulgaris56.6478.1580.81422forward
CNT30486152Corylus avellanaOlea europaea40.5433.3781.46302forward
CNT30506399Corylus avellanaNicotiana attenuata44.399.782.73330forward
CNT30182233Corylus avellanaSecale cereale45.6454.6682.94340forward
CNT30289293Corylus avellanaTriticum aestivum24.359.5486.19181forward
CNT30223417Corylus avellanaHordeum vulgare28.0592.0788.52209forward
CNT3084565Corylus avellanaVigna radiata45.372082.25338forward
CNT30539234Corylus avellanaBrassica napus50.641.283.82377forward
CNT30244810Corylus avellanaAvena sativa28.0525.8784.69209forward
CNT30261302Corylus avellanaBrassica rapa51.5474.2784.11384forward
CNT30447453Corylus avellanaSaccharum spontaneum39.7351.6684.12296forward
CNT30134072Corylus avellanaLolium perenne30.3431.1386.28226forward
CNT30231964Corylus avellanaAnanas comosus25.115.3382.35187forward
CNT3066796Corylus avellanaLeersia perrieri39.3375.3284.3293forward
CNT30653881Corylus avellanaRosa chinensis60.442.1385.56450forward
CNT30718631Corylus avellanaMalus domestica golden49.5364.2982.93369forward
CNT30339698Corylus avellanaEragrostis tef59.8736.1181.17446forward
CNT30477892Corylus avellanaArabidopsis halleri53.5637.2980.95399forward
CNT30363710Corylus avellanaSorghum bicolor29.6637.6585.52221forward
CNT30595456Corylus avellanaOryza meridionalis39.7351.9384.46296forward
CNT30360575Corylus avellanaLactuca sativa49.9361.6984.14372forward
CNT30411763Corylus avellanaPapaver somniferum28.0518.5479.9209forward
CNT30570592Corylus avellanaVitis vinifera28.8666.5687.44215forward
CNT30645151Corylus avellanaCannabis sativa52.2140.8279.18389forward
CNT3055709Corylus avellanaAmborella trichopoda39.3344.879.86293forward
CNT30105598Corylus avellanaOryza longistaminata48.9952.9882.74365forward
CNT30319856Corylus avellanaAsparagus officinalis27.6573.5783.01206forward
CNT30574680Corylus avellanaOryza barthii48.9939.8582.74365forward
CNT30580197Corylus avellanaEchinochloa crusgalli48.5943.9382.87362forward
CNT30499107Corylus avellanaDigitaria exilis39.3374.9483.96293forward
CNT30115589Corylus avellanaOryza nivara48.9925.5882.74365forward
CNT30603529Corylus avellanaOryza punctata46.5845.3683.86347forward
CNT30550386Corylus avellanaOryza brachyantha27.2573.8286.7203forward
CNT30337932Corylus avellanaCynara cardunculus36.1132.884.76269forward
CNT30726386Corylus avellanaLupinus angustifolius28.4623.5880.19212forward
CNT3064271Corylus avellanaSelaginella moellendorffii39.7353.8282.09296forward
CNT3050773Corylus avellanaCucumis sativus28.9938.4382.87216forward

Expression of CNT30316147

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MSSNLGFLKWCITFSFLPVKKLSTTMTLSPRSIRRSTRCDPTKPAPPVTTIRSPLRFRPSGTLPPELYIWNADR*

>peptide 2 (47 aa)
MAWGRAGEEGEEEGGYSNADEDEDESLLSEQVANRAGHGEPRFRLLG*

Sequence

>CNT30316147
ACCGATGGGATTGACGTTTCCCCAGTAGGTTTCGACCTGAGGGTGTTGCAGTGGATCTCCGTACACCTCACTGGTGCTCGTTAGCAAAAACCGCGCACCG
ACCCGCTTGGCGAGCCCCAGCATGTTCAGCGTTCCCACCACATTAGATATGATGGTCTTGACGGGGTTGAACTTGTAGTGCACAGGGGAGGCAGGGCAAG
CGAGGTGATAGATCTGGTCGACCTCGAGCAGGAGGGGCTCGACGACGTCGTGGCGGATGAGCTCGAATCTGGGGTTCCTGAAGTGGTGCATCACGTTCTC
TTTCCTCCCCGTGAAGAAGTTATCCACGACGATGACGCTGTCCCCGCGCTCAATCAGACGGTCCACGAGATGTGACCCCACGAAGCCAGCCCCACCTGTG
ACCACGATCCGGAGCCCCTTGCGTTTCAGGCCCAGCGGGACCTTGCCGCCCGAGCTGTACATCTGGAACGCGGACCGTTGATCTTGCAGGGCGGGCCTGT
AGTTGTGGGTCTCCCGGGTCGGGTCGGATATGAAGTGCGTGTTGTGGATCGGATTGTATGATTCGCTCCCGTAGGAGTAATGGCTTGGGGAAGAGCGGGG
GAGGAGGGTGAAGAAGAGGGTGGCTATAGCAATGCCGACGAGGACGAAGACGAGTCGTTGCTCTCGGAGCAGGTAGCGAATCGGGCGGGTCACGGAGAGC
CACGGTTTCGGTTGCTTGGGTGAGTACGCGTCCGACACGGGTTGG