Detailed information on CNT3031606


BLAST search results

BLAST vs Swiss-Prot:
sp|P92997|GL113_ARATH, E-value = 3e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517589Theobroma cacaoJuglans regia41.9835.9784.82191forward
CNT3071407Theobroma cacaoQuercus suber40.8879.1584.41186forward
CNT30382100Theobroma cacaoManihot esculenta45.9341.383.25209forward
CNT3045720Theobroma cacaoPrunus dulcis23.5217.8388.79107forward
CNT30638659Theobroma cacaoCapsicum annuum34.0723.4183.87155forward
CNT3090146Theobroma cacaoSolanum tuberosum30.3317.9985.51138forward
CNT30717911Theobroma cacaoMalus domestica golden43.9624.5781.5200forward
CNT30155140Theobroma cacaoPrunus persica23.5234.5288.79107forward
CNT30573105Theobroma cacaoVitis vinifera45.2734.0583.5206forward
CNT30706384Theobroma cacaoPrunus avium23.5216.887.85107forward

Expression of CNT3031606

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MGGFEPKTAFAIVITPGFWLLRPAKATALVFPILSWKWMRPTGKTNTSPGYKTLVMRRF

>peptide 2 (61 aa)
MTTARKMDDTLFKIKNYHILWIHDTLFKLIVVPPEPGLKRGNNILVQLEGLGENIRIDGRV*

Sequence

>CNT3031606
TACATAGAATGCAGTGTTATGGCCTAAAATATTTTAATATATAGAATGCTGAACACAGCAAAGGAGAGGTACAAATGTAATCACTTGATCCATTATTATT
AGGTTTATGACAACAGCAAGGAAGATGGATGACACATTATTCAAAATAAAAAACTACCATATCTTATGGATTCATGACACATTATTCAAATTAATTGTTG
TCCCACCAGAACCGGGACTGAAGAGAGGTAACAATATTCTTGTCCAGCTGGAAGGCCTTGGTGAGAACATCAGGATTGATGGGAGGGTTTGAGCCAAAGA
CTGCCTTTGCAATAGTGATTACTCCTGGATTTTGGCTGCTGAGACCAGCAAAGGCAACTGCATTAGTTTTCCCTATATTGAGCTGGAAGTGGATGAGACC
AACGGGGAAAACAAACACATCTCCAGGGTACAAGACTTTGGTGATGAGACGATTC