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Detailed information on CNT30315343


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548978Corylus avellanaIpomoea triloba26.4613.4583.19113forward
CNT30517998Corylus avellanaJuglans regia49.8816.9990.61213forward
CNT30698212Corylus avellanaQuercus lobata49.8832.1890.14213forward
CNT30281051Corylus avellanaChenopodium quinoa20.1410.7288.3786forward
CNT30729814Corylus avellanaCorchorus capsularis40.2821.0588.37172forward
CNT3069543Corylus avellanaQuercus suber37.2420.4493.08159forward
CNT30402626Corylus avellanaBeta vulgaris20.148.8288.3786forward
CNT30505263Corylus avellanaNicotiana attenuata26.4614.6983.19113forward
CNT3043425Corylus avellanaPrunus dulcis41.2228.6289.2176forward
CNT30164954Corylus avellanaPistacia vera21.3129.7491.2191forward
CNT30633336Corylus avellanaCapsicum annuum25.2913.6983.33108forward
CNT30540682Corylus avellanaBrassica napus26.9317.2285.22115forward
CNT30236524Corylus avellanaBrassica oleracea26.9317.7586.09115forward
CNT30508764Corylus avellanaSolanum lycopersicum24.5921.381.9105forward
CNT30309702Corylus avellanaCamelina sativa30.2113.2485.27129forward
CNT3060956Corylus avellanaArabidopsis lyrata37.9419.6482.1162forward
CNT3077592Corylus avellanaBrassica juncea26.9315.7585.22115forward
CNT30264014Corylus avellanaBrassica rapa26.9315.6285.22115forward
CNT30611294Corylus avellanaArabis alpina26.76.9185.09114forward
CNT30598132Corylus avellanaFraxinus excelsior26.2317.8985.71112forward
CNT30360842Corylus avellanaLactuca sativa30.6819.7984.73131forward
CNT30643841Corylus avellanaCannabis sativa32.0818.6686.13137forward
CNT30111654Corylus avellanaFicus carica41.6926.9785.96178forward
CNT30725581Corylus avellanaLupinus angustifolius26.717.2785.09114forward
CNT3050332Corylus avellanaCucumis sativus25.0622.6284.11107forward

Expression of CNT30315343

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MSDARAMNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVVVLMWFILYNGSRYVSEFCKRHLW*

>peptide 2 (65 aa)
VDLVRRRGGGAHVRCQSYELGSAQDLSIQCHFWALHVGLVGALSFQHFGGRVDVVHSLQRISICI*

>peptide 3 (40 aa)
MTNSDMVQTINAAAIYLTVIGMKFVQTTICIAQHVLYSLS*

Sequence

>CNT30315343
GTAGATTTGGTGCGTCGAAGGGGAGGAGGAGCTCATGTCAGATGCCAGAGCTATGAACTGGGTTCAGCGCAAGATCTATCTATACAATGTCACTTTTGGG
CTCTACATGTTGGATTGGTGGGAGCGTTATCTTTTCAACACTTTGGTGGTCGTGTTGATGTGGTTCATTCTTTACAACGGATCTCGATATGTATCTGAGT
TCTGCAAGAGGCATTTATGGTGAGGATCAGAGCAAGAATCAACTTCAAGGATGACAAATTCAGATATGGTACAGACGATTAATGCTGCTGCAATATATCT
CACTGTGATTGGAATGAAGTTTGTACAGACAACTATTTGCATAGCCCAGCATGTATTATACTCCTTGTCATGAAGATTTTCAGACCATTTTCTTTGGCTT
TCAGGCTCACTTATATTTTGCAGGTTT